2024

Murcia, P. R. , Chambers, T. M., Daly, J. M., Pusterla, N., Damdinjav, B., Ulaankhuu, A. and Mojsiejczuk, L. (2024) Should the equine community be concerned about the emergence of the H5N1 subtype of highly pathogenic avian influenza in US cattle? Equine Veterinary Journal, (Accepted for Publication)

Damdinjav, B. et al. (2024) Evidence of H5N1 influenza spillover infections in horses in Mongolia. Emerging Infectious Diseases, (Accepted for Publication)

Dee, K., Manali, M., Bissett, L. , Bone, J., Magill, C., Davis, C. , Willett, B. J. and Murcia, P. R. (2024) Smallpox vaccination campaigns resulted in age-associated population cross-immunity against monkeypox virus. Journal of General Virology, 105(6), 001999. (doi: 10.1099/jgv.0.001999) (PMID:38861287)

2023

Tyson, G. B. et al. (2023) Increase in SARS-CoV-2 seroprevalence in UK domestic felids despite weak immunogenicity of post-Omicron variants. Viruses, 15(8), 1661. (doi: 10.3390/v15081661) (PMID:37632004) (PMCID:PMC10458763)

Dee, K., Schultz, V. , Haney, J., Bissett, L. A. , Magill, C. and Murcia, P. R. (2023) Influenza A and respiratory syncytial virus trigger a cellular response that blocks severe acute respiratory syndrome virus 2 infection in the respiratory tract. Journal of Infectious Diseases, 227(12), pp. 1396-1406. (doi: 10.1093/infdis/jiac494) (PMID:36550077) (PMCID:PMC10266949)

Tyson, G. B., Jones, S., Logan, N., McDonald, M., Marshall, L., Murcia, P. R. , Willett, B. J. , Weir, W. and Hosie, M. J. (2023) SARS-CoV-2 seroprevalence and cross-variant antibody neutralization in cats, United Kingdom. Emerging Infectious Diseases, 29(6), pp. 1223-1227. (doi: 10.3201/eid2906.221755) (PMID:37141617) (PMCID:PMC10202862)

Manali, M. et al. (2023) SARS-CoV-2 evolution and patient immunological history shape the breadth and potency of antibody-mediated immunity. Journal of Infectious Diseases, 227(1), pp. 40-49. (doi: 10.1093/infdis/jiac332) (PMID:35920058) (PMCID:PMC9384671)

Martin, S., Ayling, M., Patrono, L., Caccamo, M., Murcia, P. and Leggett, R. M. (2023) Capturing variation in metagenomic assembly graphs with MetaCortex. Bioinformatics, 39(1), btad020. (doi: 10.1093/bioinformatics/btad020) (PMID:36722204) (PMCID:PMC9889960)

2022

Tyson, G. B., Jones, S., Logan, N., McDonald, M., Murcia, P. R. , Willett, B. J. , Weir, W. and Hosie, M. J. (2022) Rising SARS-CoV-2 seroprevalence and patterns of cross-variant antibody neutralization in UK domestic cats. bioRxiv, (doi: 10.1101/2022.11.18.517046)

Haney, J., Vijayakrishnan, S. , Streetley, J. , Dee, K., Goldfarb, D. M., Clarke, M. , Mullin, M., Carter, S. D. , Bhella, D. and Murcia, P. R. (2022) Coinfection by influenza A virus and respiratory syncytial virus produces hybrid virus particles. Nature Microbiology, 7(11), pp. 1879-1890. (doi: 10.1038/s41564-022-01242-5) (PMID:36280786)

Willett, B. J. et al. (2022) Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway. Nature Microbiology, 7, 1709. (doi: 10.1038/s41564-022-01241-6) (PMID:36114232) (PMCID:PMC9483304)

Willett, B. J. et al. (2022) SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway. Nature Microbiology, 7(8), pp. 1161-1179. (doi: 10.1038/s41564-022-01143-7) (PMID:35798890) (PMCID:PMC9352574)

Whitlock, F., Murcia, P. R. and Newton, J. R. (2022) A review on equine influenza from a human influenza perspective. Viruses, 14(6), 1312. (doi: 10.3390/v14061312) (PMID:35746783) (PMCID:PMC9229935)

Willett, B. J. et al. (2022) Distinct antigenic properties of the SARS-CoV-2 Omicron lineages BA.4 and BA.5. bioRxiv, (doi: 10.1101/2022.05.25.493397)

Conley, M. J. et al. (2022) Helical ordering of envelope associated proteins and glycoproteins in respiratory syncytial virus. EMBO Journal, 41(3), e109728. (doi: 10.15252/embj.2021109728) (PMID:34935163) (PMCID:PMC8804925)

2021

Amat, J. A.R. et al. (2021) Long-term adaptation following influenza A virus host shifts results in increased within-host viral fitness due to higher replication rates, broader dissemination within the respiratory epithelium and reduced tissue damage. PLoS Pathogens, 17(12), e1010174. (doi: 10.1371/journal.ppat.1010174) (PMID:34919598) (PMCID:PMC8735595)

Davis, C. et al. (2021) Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination. PLoS Pathogens, 17(12), e1010022. (doi: 10.1371/journal.ppat.1010022) (PMID:34855916) (PMCID:PMC8639073)

Herder, V. et al. (2021) Elevated temperature inhibits SARS-CoV-2 replication in respiratory epithelium independently of IFN-mediated innate immune defences. PLoS Biology, 19(12), e3001065. (doi: 10.1371/journal.pbio.3001065) (PMID:34932557) (PMCID:PMC8765667)

de Souza, W. M. et al. (2021) Paramyxoviruses from neotropical bats suggest a novel genus and nephrotropism. Infection, Genetics and Evolution, 95, 105041. (doi: 10.1016/j.meegid.2021.105041) (PMID:34411742)

Dee, K., Goldfarb, D. M., Haney, J., Amat, J. A.R., Herder, V. , Stewart, M., Szemiel, A. M., Baguelin, M. and Murcia, P. R. (2021) Human rhinovirus infection blocks SARS-CoV-2 replication within the respiratory epithelium: implications for COVID-19 epidemiology. Journal of Infectious Diseases, 224(1), pp. 31-38. (doi: 10.1093/infdis/jiab147) (PMID:33754149) (PMCID:PMC8083659)

Hosie, M. J. et al. (2021) Detection of SARS-CoV-2 in respiratory samples from cats in the UK associated with human-to-cat transmission. Veterinary Record, 188(8), e247. (doi: 10.1002/vetr.247) (PMID:33890314) (PMCID:PMC8251078)

Hughes, E. C. et al. (2021) Severe Acute Respiratory Syndrome Coronavirus 2 serosurveillance in a patient population reveals differences in virus exposure and antibody-mediated immunity according to host demography and healthcare setting. Journal of Infectious Diseases, 223(6), pp. 971-980. (doi: 10.1093/infdis/jiaa788) (PMID:33367847) (PMCID:PMC7798933)

2020

Mollentze, N. , Streicker, D. G. , Murcia, P. R. , Hampson, K. and Biek, R. (2020) Virulence mismatches in index hosts shape the outcomes of cross-species transmission. Proceedings of the National Academy of Sciences of the United States of America, 117(46), pp. 28859-28866. (doi: 10.1073/pnas.2006778117) (PMID:33122433) (PMCID:PMC7682402)

Nickbakhsh, S. , Ho, A. , Marques, D. F.P., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2020) Reply to Li et al. Journal of Infectious Diseases, 222(4), pp. 696-698. (doi: 10.1093/infdis/jiaa322) (PMID:32497172)

Holgate, S. et al. (2020) Preparing for a challenging winter 2020/21. Technical Report. Academy of Medical Sciences, London.

Nickbakhsh, S. , Ho, A. , Marques, D. F.P., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2020) Epidemiology of seasonal coronaviruses: establishing the context for the emergence of coronavirus disease 2019. Journal of Infectious Diseases, 222(1), pp. 17-25. (doi: 10.1093/infdis/jiaa185) (PMID:32296837) (PMCID:PMC7184404)

Murcia, P. , Streiker, D. , Da Silva Filipe, A. , Robertson, D. , Jarrett, R. , Willett, B. , Hosie, M. , Biek, R. , Allan, K. and Weir, W. (2020) Send cat and dog samples to test for SARS-CoV-2. Veterinary Record, 186(17), p. 571. (doi: 10.1136/vr.m2019) (PMID:32451348)

Nickbakhsh, S. , Mair, C. , Matthews, L. , Reeve, R. , Johnson, P.C.D. , Thorburn, F., Von Wissmann, B., McMenamin, J., Gunson, R.N. and Murcia, P.R. (2020) Reply to Kloepfer and Gern: Independent studies suggest an arms race between influenza and rhinovirus: what next? Proceedings of the National Academy of Sciences of the United States of America, 117(13), pp. 6988-6989. (doi: 10.1073/pnas.2000903117) (PMID:32127475) (PMCID:PMC7132304)

2019

Nickbakhsh, S. et al. (2019) Virus-virus interactions impact the population dynamics of influenza and the common cold. Proceedings of the National Academy of Sciences of the United States of America, 116(52), pp. 27142-27150. (doi: 10.1073/pnas.1911083116) (PMID:31843887) (PMCID:PMC6936719)

Mair, C. , Nickbakhsh, S. , Reeve, R. , McMenamin, J., Reynolds, A., Gunson, R. N., Murcia, P. R. and Matthews, L. (2019) Estimation of temporal covariances in pathogen dynamics using Bayesian multivariate autoregressive models. PLoS Computational Biology, 15(12), e1007492. (doi: 10.1371/journal.pcbi.1007492) (PMID:31834896) (PMCID:PMC6934324)

Fumagalli, M. J., de Souza, W. M., de Araujo, J., Modha, S. , Queiroz, L. H., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Krykféie dicistrovirus: a novel dicistrovirus in velvety free-tailed bats from Brazil. Infection, Genetics and Evolution, 75, 104036. (doi: 10.1016/j.meegid.2019.104036) (PMID:31499226)

Murcia, P.R. (2019) Clinical insights: the equine microbiome. Equine Veterinary Journal, 51(6), pp. 714-715. (doi: 10.1111/evj.13165) (PMID:31584723)

Blanco-Lobo, P., Rodriguez, L., Reedy, S., Oladunni, F. S., Nogales, A., Murcia, P. R. , Chambers, T. M. and Martinez-Sobrido, L. (2019) A bivalent live-attenuated vaccine for the prevention of equine influenza virus. Viruses, 11(10), e933. (doi: 10.3390/v11100933)

Maabar, M., Davison, A. J. , Vučak, M., Thorburn, F., Murcia, P. , Gunson, R., Palmarini, M. and Hughes, J. (2019) DisCVR: rapid viral diagnosis from high-throughput sequencing data. Virus Evolution, 5(2), vez033. (doi: 10.1093/ve/vez033) (PMID:31528358) (PMCID:PMC6735924)

de Souza, W. M., Fumagalli, M. J., de Araujo, J., Ometto, T., Modha, S. , Thomazelli, L. M., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil. Scientific Reports, 9, 5556. (doi: 10.1038/s41598-019-42110-3) (PMID:30944402) (PMCID:PMC6447618)

de Souza, W. M., Fumagalli, M. J., Sabino-Santos, G., Motta Maia, F. G., Modha, S. , Teixeira Nunes, M. R., Murcia, P. R. and Moraes Figueiredo, L. T. (2019) A novel Hepacivirus in wild rodents from South America. Viruses, 11(3), e297. (doi: 10.3390/v11030297) (PMID:30909631) (PMCID:PMC6466192)

Zhu, H. et al. (2019) Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds. PLoS Pathogens, 15(2), e1007531. (doi: 10.1371/journal.ppat.1007531) (PMID:30731004) (PMCID:PMC6366691)

2018

Zhu, H., Gifford, R. and Murcia, P. R. (2018) Distribution, diversity and evolution of endogenous retroviruses in perissodactyl genomes. Journal of Virology, 92(23), e00927-18. (doi: 10.1128/JVI.00927-18) (PMID:30209175) (PMCID:PMC6232481)

Souza, W. M. d. et al. (2018) Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. Scientific Reports, 8, 16315. (doi: 10.1038/s41598-018-34630-1) (PMID:30397237) (PMCID:PMC6218518)

Maia, F. G. M., de Souza, W. M., Sabino-Santos, G., Fumagalli, M. J., Modha, S. , Murcia, P. R. and Figueiredo, L. T. M. (2018) A novel polyomavirus in sigmodontine rodents from São Paulo State, Brazil. Archives of Virology, 163(10), pp. 2913-2915. (doi: 10.1007/s00705-018-3913-8) (PMID:29931397)

Voorhees, I. E.H. et al. (2018) Multiple incursions and recurrent epidemic fade-out of H3N2 canine influenza A virus in the United States. Journal of Virology, 92(16), 00323-18. (doi: 10.1128/JVI.00323-18) (PMID:29875234) (PMCID:PMC6069211)

de Souza, W. M., Romeiro, M. F., Sabino-Santos, G., Maia, F. G. M., Fumagalli, M. J., Modha, S. , Nunes, M. R. T., Murcia, P. R. and Figueiredo, L. T. M. (2018) Novel orthohepeviruses in wild rodents from São Paulo State, Brazil. Virology, 519, pp. 12-16. (doi: 10.1016/j.virol.2018.03.025) (PMID:29627586) (PMCID:PMC5998382)

Chauché, C., Nogales, A., Zhu, H., Goldfarb, D., Shanizza A.I., A., Gu, Q. , Parrish, C.R., Martínez-Sobrido, L., Marshall, J.F. and Murcia, P.R. (2018) Mammalian adaptation of an avian influenza A virus involves stepwise changes in NS1. Journal of Virology, 92(5), e01875-17. (doi: 10.1128/JVI.01875-17) (PMID:29237841) (PMCID:PMC5809720)

Daly, J.M. and Murcia, P.R. (2018) Strategic implementation of vaccines for control of equine influenza. Equine Veterinary Journal, 50(2), pp. 153-154. (doi: 10.1111/evj.12794) (PMID:29392805)

Rodriguez, L., Reedy, S., Nogales, A., Murcia, P. R. , Chambers, T. M. and Martínez-Sobrido, L. (2018) Development of a novel equine influenza virus live-attenuated vaccine. Virology, 516, pp. 76-85. (doi: 10.1016/j.virol.2018.01.005) (PMID:29331866) (PMCID:PMC5840510)

de Souza, W. M. et al. (2018) Discovery of novel anelloviruses in small mammals expands the host range and diversity of the Anelloviridae. Virology, 514, pp. 9-17. (doi: 10.1016/j.virol.2017.11.001) (PMID:29128758)

2017

Goldstein, E. J., Harvey, W. T., Wilkie, G. S., Shepherd, S. J., MacLean, A. R., Murcia, P. R. and Gunson, R. N. (2017) Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses. Microbial Genomics, 4, (doi: 10.1099/mgen.0.000137) (PMID:29310750) (PMCID:PMC5857367)

Nogales, A., Chauché, C., DeDiego, M. L., Topham, D. J., Parrish, C. R., Murcia, P. R. and Martínez-Sobrido, L. (2017) The K186E amino acid substitution in the canine influenza virus H3N8 NS1 protein restores its ability to inhibit host gene expression. Journal of Virology, 91(22), e00877-17. (doi: 10.1128/JVI.00877-17) (PMID:28835506)

Rodriguez, L., Nogales, A., Murcia, P. R. , Parrish, C. and Martínez-Sobrido, L. (2017) A bivalent live-attenuated influenza vaccine for the control and prevention of H3N8 and H3N2 canine influenza viruses. Vaccine, 35(34), pp. 4374-4381. (doi: 10.1016/j.vaccine.2017.06.060) (PMID:28709557)

Rodriguez, L., Nogales, A., Reilly, E. C., Topham, D. J., Murcia, P. R. , Parrish, C. R. and Martinez Sobrido, L. (2017) A live-attenuated influenza vaccine for H3N2 canine influenza virus. Virology, 504, pp. 96-106. (doi: 10.1016/j.virol.2017.01.020) (PMID:28167384)

de Souza, W. M., Romeiro, M. F., Modha, S. , de Araujo, J., Queiroz, L. H., Durigon, E. L., Moraes Figueiredo, L. T., Murcia, P. R. and Gifford, R. (2017) Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution. Journal of General Virology, 98(2), pp. 225-229. (doi: 10.1099/jgv.0.000671) (PMID:28284244) (PMCID:PMC5646239)

Nogales, A., Rodriguez, L., Chauché, C., Huang, K., Reilly, E. C., Topham, D. J., Murcia, P. R. , Parrish, C. R. and Martínez-Sobrido, L. (2017) A temperature sensitive live-attenuated canine influenza virus H3N8 vaccine. Journal of Virology, 91(4), e02211-16. (doi: 10.1128/JVI.02211-16) (PMID:27928017) (PMCID:PMC5286902)

Nogales, A., Huang, K., Chauché, C., DeDiego, M. L., Murcia, P. R. , Parrish, C. R. and Martínez-Sobrido, L. (2017) Canine influenza viruses with modified NS1 proteins for the development of live-attenuated vaccines. Virology, 500, pp. 1-10. (doi: 10.1016/j.virol.2016.10.008) (PMID:27750071)

2016

Lipsitch, M. et al. (2016) Viral factors in influenza pandemic risk assessment. eLife, 5, e18491. (doi: 10.7554/eLife.18491) (PMID:27834632) (PMCID:PMC5156527)

Fusaro, A. et al. (2016) Unexpected interfarm transmission dynamics during a highly pathogenic avian influenza epidemic. Journal of Virology, 90(14), pp. 6401-6411. (doi: 10.1128/jvi.00538-16) (PMID:27147741) (PMCID:PMC4936132)

Nickbakhsh, S. , Thorburn, F., Von Wissmann, B., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2016) Extensive multiplex PCR diagnostics reveals new insights into the epidemiology of viral respiratory infections. Epidemiology and Infection, 144(10), pp. 2064-2076. (doi: 10.1017/S0950268816000339) (PMID:26931455)

2015

Thorburn, F., Bennett, S., Modha, S., Murdoch, D., Gunson, R. and Murcia, P. (2015) Erratum to 'the use of next generation sequencing in the diagnosis and typing of respiratory infections' [J. Clin. Virol. 69 (2015) 96–100]. Journal of Clinical Virology, 70, p. 128. (doi: 10.1016/j.jcv.2015.06.101)

Brennan, B. et al. (2015) In memoriam – Richard M. Elliott (1954–2015). Journal of General Virology, 96(8), pp. 1975-1978. (doi: 10.1099/jgv.0.000241) (PMID:26315040)

Fusaro, A., Tassoni, L., Hughes, J. , Milani, A., Salviato, A., Schivo, A., Murcia, P. R. , Bonfanti, L., Cattoli, G. and Monne, I. (2015) Evolutionary trajectories of two distinct avian influenza epidemics: parallelisms and divergences. Infection, Genetics and Evolution, 34, pp. 457-466. (doi: 10.1016/j.meegid.2015.05.020) (PMID:26003682)

Thorburn, F., Bennett, S., Modha, S. , Murdoch, D., Gunson, R. and Murcia, P. R. (2015) The use of next generation sequencing in the diagnosis and typing of respiratory infections. Journal of Clinical Virology, 69, pp. 96-100. (doi: 10.1016/j.jcv.2015.06.082) (PMID:26209388) (PMCID:PMC4533236)

Feng, K. H. et al. (2015) Equine and canine influenza H3N8 viruses show minimal biological differences despite phylogenetic divergence. Journal of Virology, 89(13), pp. 6860-6873. (doi: 10.1128/JVI.00521-15) (PMID:25903329) (PMCID:PMC4468500)

Zhu, H., Hughes, J. and Murcia, P. R. (2015) Origins and evolutionary dynamics of H3N2 canine influenza virus. Journal of Virology, 89(10), pp. 5406-5418. (doi: 10.1128/JVI.03395-14) (PMID:25740996) (PMCID:PMC4442499)

Patrono, L. V., Bonfante, F., Zanardello, C., Terregino, C., Capua, I. and Murcia, P. R. (2015) Phylogenetically distinct equine influenza viruses show different tropism for the swine respiratory tract. Journal of General Virology, 96(5), pp. 969-974. (doi: 10.1099/vir.0.000049) (PMID:25593159) (PMCID:PMC4631061)

Parrish, C. R., Murcia, P. R. and Holmes, E. C. (2015) Influenza virus reservoirs and intermediate hosts: dogs, horses, and new possibilities for influenza virus exposure of humans. Journal of Virology, 89(6), pp. 2990-2994. (doi: 10.1128/JVI.03146-14) (PMID:25540375)

Chedom, D. F., Murcia, P. R. and Greenman, C. D. (2015) Inferring the clonal structure of viral populations from time series sequencing. PLoS Computational Biology, 11(11), e1004344. (doi: 10.1371/journal.pcbi.1004344) (PMID:26571026) (PMCID:PMC4646700)

2014

Kao, R. R., Haydon, D. T. , Lycett, S. J. and Murcia, P. R. (2014) Supersize me: how whole-genome sequencing and big data are transforming epidemiology. Trends in Microbiology, 22(5), pp. 282-291. (doi: 10.1016/j.tim.2014.02.011)

Monne, I. et al. (2014) Emergence of a highly pathogenic avian influenza virus from a low-pathogenic progenitor. Journal of Virology, 88(8), pp. 4375-4388. (doi: 10.1128/JVI.03181-13)

Baker, K.S. et al. (2014) Viral antibody dynamics in a chiropteran host. Journal of Animal Ecology, 83(2), pp. 415-428. (doi: 10.1111/1365-2656.12153) (PMID:24111634)

Baker, K. S. and Murcia, P. R. (2014) Poxviruses in bats … so what? Viruses, 6(4), pp. 1564-1577. (doi: 10.3390/v6041564)

Gonzalez, G., Marshall, J. F., Morrell, J., Robb, D., McCauley, J. W., Perez, D. R., Parrish, C. R. and Murcia, P. R. (2014) Infection and pathogenesis of canine, equine and human influenza viruses in canine tracheas. Journal of Virology, 88(16), pp. 9208-9219. (doi: 10.1128/JVI.00887-14) (PMID:24899186) (PMCID:PMC4136294)

2013

Baker, K.S. et al. (2013) Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus. Virology, 441(2), pp. 95-106. (doi: 10.1016/j.virol.2013.03.014)

Murcia, P.R. et al. (2013) Evolution of equine influenza virus in vaccinated horses. Journal of Virology, 87(8), pp. 4768-4771. (doi: 10.1128/JVI.03379-12)

Baker, K.S. et al. (2013) Novel, potentially zoonotic paramyxoviruses from the African straw-Colored fruit bat eidolon helvum. Journal of Virology, 87(3), pp. 1348-1358. (doi: 10.1128/JVI.01202-12)

Stack, J.C., Murcia, P.R. , Grenfell, B.T., Wood, J.L.N. and Holmes, E.C. (2013) Inferring the inter-host transmission of influenza A virus using patterns of intra-host genetic variation. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1750), p. 20122173. (doi: 10.1098/rspb.2012.2173)

2012

Williamson, S. M., Tucker, A. W., McCrone, I. S., Bidewell, C. A., Brons, N., Habernoll, H., Essen, S. C., Brown, I. H., Wood, J. L. N. and Murcia, P. (2012) Descriptive clinical and epidemiological characteristics of influenza A H1N1 2009 virus infections in pigs in England. Veterinary Record, 171(11), p. 271. (doi: 10.1136/vr.100673) (PMID:22865115)

Cathcart, M.P. and Murcia, P.R. (2012) Hide and seek: diagnosing equine viral diseases using molecular biology techniques. Equine Veterinary Journal, 44(4), pp. 379-381. (doi: 10.1111/j.2042-3306.2012.00591.x)

Baker, K.S., Todd, S., Marsh, G., Fernandez-Loras, A., Suu-Ire, R., Wood, J.L.N., Wang, L.F., Murcia, P.R. and Cunningham, A.A. (2012) Co-circulation of diverse paramyxoviruses in an urban African fruit bat population. Journal of General Virology, 93(4), pp. 850-856. (doi: 10.1099/vir.0.039339-0)

Lefevre, E. A. et al. (2012) Immune responses in pigs vaccinated with adjuvanted and non-adjuvanted A(H1N1)pdm/09 influenza vaccines used in human immunization programmes. PLoS ONE, 7(3), e32400. (doi: 10.1371/journal.pone.0032400) (PMID:22427834) (PMCID:PMC3302873)

Hughes, J. et al. (2012) Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks. PLoS Pathogens, 8(12), e1003081. (doi: 10.1371/journal.ppat.1003081)

Murcia, P. R. et al. (2012) Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs. PLoS Pathogens, 8(5), e1002730. (doi: 10.1371/journal.ppat.1002730)

2011

Murcia, P. R. and Wood, J. L. N. (2011) Equine influenza virus: a jumping virus that races with Thoroughbred horses and greyhounds. Veterinary Journal, 189(1), pp. 3-4. (doi: 10.1016/j.tvjl.2010.10.023) (PMID:21123098)

Murcia, P.R. , Wood, J.L.N. and Holmes, E.C. (2011) Genome-scale evolution and phylodynamics of equine H3N8 influenza A virus. Journal of Virology, 85(11), pp. 5312-5322. (doi: 10.1128/JVI.02619-10)

McKinley, T.J., Murcia, P.R. , Gog, J.R., Varela, M. and Wood, J.L.N. (2011) A Bayesian approach to analyse genetic variation within RNA viral populations. PLoS Computational Biology, 7(3), e1002027. (doi: 10.1371/journal.pcbi.1002027)

2010

Murcia, P.R. et al. (2010) Intra- and interhost evolutionary dynamics of equine influenza virus. Journal of Virology, 84(14), pp. 6493-6454. (doi: 10.1128/JVI.00112-10)

Hoelzer, K., Murcia, P.R. , Baillie, G.J., Wood, J.L.N., Metzger, S.M., Osterrieder, N., Dubovi, E.J., Holmes, E.C. and Parrish, C.R. (2010) Intrahost evolutionary dynamics of canine influenza virus in naive and partially immune dogs. Journal of Virology, 84(10), pp. 5329-5335. (doi: 10.1128/​JVI.02469-09)

Nunes, S.F., Murcia, P.R. , Tiley, L.S., Brown, I.H., Tucker, A.W., Maskell, D.J. and Wood, J.L.N. (2010) An ex vivo swine tracheal organ culture for the study of influenza infection. Influenza and Other Respiratory Viruses, 4(1), pp. 7-15. (doi: 10.1111/j.1750-2659.2009.00119.x)

2009

Heslin, D.J., Murcia, P. , Arnaud, F., Van Doorslaer, K., Palmarini, M. and Lenz, J. (2009) A single amino acid substitution in a segment of the CA protein within gag that has similarity to human immunodeficiency virus type 1 blocks infectivity of a human endogenous retrovirus K provirus in the human genome. Journal of Virology, 83(2), (doi: 10.1128/JVI.01439-08)

2008

Murcia, P.R. , Delhon, G., Gonzalez, M.J., Vilas, M., Ramos-Vara, J.A., Heras, M.D.L., Nordhausen, R.W. and Uzal, F.A. (2008) Cluster of cases of malignant schwannoma in cattle. Veterinary Record, 163(11), pp. 331-335. (doi: 10.1136/vr.163.11.331)

2007

De Las Heras Guillamon, M., Murcia, P. , Ortín, A., Azúa, J., Borderías, L., Álvarez, R., Jiménez-Más, J. A., Marchetti, A. and Palmarini, M. (2007) Jaagsiekte sheep retrovirus is not detected in human lung adenocarcinomas expressing antigens related to the Gag polyprotein of betaretrovirus. Cancer Letters, 258(1), pp. 22-30. (doi: 10.1016/j.canlet.2007.08.006) (PMID:17889995)

Arnaud, F., Murcia, P.R. and Palmarini, M. (2007) Mechanisms of late restriction induced by an endogenous retrovirus. Journal of Virology, 81(20), pp. 11441-11451. (doi: 10.1128/JVI.01214-07)

Murcia, P.R. , Arnaud, F. and Palmarini, M. (2007) The transdominant endogenous retrovirus enJS56A1 associates with and blocks intracellular trafficking of Jaagsiekte sheep retrovirus Gag. Journal of Virology, 81(4), pp. 1762-1772. (doi: 10.1128/JVI.01859-06)

2006

Varela, M., Chow, Y.H., Sturkie, C., Murcia, P.R. and Palmarini, M. (2006) Association of RON tyrosine kinase with the Jaagsiekte sheep retrovirus envelope glycoprotein. Virology, 350(2), pp. 347-357. (doi: 10.1016/j.virol.2006.01.040)

2004

Mura, M., Murcia, P.R. , Caporale, M., Spencer, T.E., Nagashima, K., Rein, A. and Palmarini, M. (2004) Late viral interference induced by transdominant Gag of an endogenous retrovirus. Proceedings of the National Academy of Sciences of the United States of America, 101(30), pp. 11117-11122. (doi: 10.1073/pnas.0402877101)

Uzal, F. A., Delhon, G., Murcia, P. R. , De las Heras, M., Luján, L., Fernández Miyakawa, M.E., Morris, W.E. and Gonzalez, M.J. (2004) Ovine pulmonary adenomatosis in Patagonia, Argentina. Veterinary Research Communications, 28(2), pp. 159-170. (doi: 10.1023/B:VERC.0000012110.49600.12) (PMID:14992245)

2003

Chow, Y.H.J., Alberti, A., Mura, M., Pretto, C., Murcia, P.R. , Albritton, L.M. and Palmarini, M. (2003) Transformation of rodent fibroblasts by the Jaagsiekte sheep retrovirus envelope is receptor independent and does not require the surface domain. Journal of Virology, 77(11), pp. 6341-6350. (doi: 10.1128/JVI.77.11.6341-6350.2003)

2002

Delhon, G.A., Gonzalez, M.J. and Murcia, P.R. (2002) Susceptibility of sensory neurons to apoptosis following infection by bovine herpesvirus type 1. Journal of General Virology, 83(9), pp. 2257-2267.

Articles

Murcia, P. R. , Chambers, T. M., Daly, J. M., Pusterla, N., Damdinjav, B., Ulaankhuu, A. and Mojsiejczuk, L. (2024) Should the equine community be concerned about the emergence of the H5N1 subtype of highly pathogenic avian influenza in US cattle? Equine Veterinary Journal, (Accepted for Publication)

Damdinjav, B. et al. (2024) Evidence of H5N1 influenza spillover infections in horses in Mongolia. Emerging Infectious Diseases, (Accepted for Publication)

Dee, K., Manali, M., Bissett, L. , Bone, J., Magill, C., Davis, C. , Willett, B. J. and Murcia, P. R. (2024) Smallpox vaccination campaigns resulted in age-associated population cross-immunity against monkeypox virus. Journal of General Virology, 105(6), 001999. (doi: 10.1099/jgv.0.001999) (PMID:38861287)

Tyson, G. B. et al. (2023) Increase in SARS-CoV-2 seroprevalence in UK domestic felids despite weak immunogenicity of post-Omicron variants. Viruses, 15(8), 1661. (doi: 10.3390/v15081661) (PMID:37632004) (PMCID:PMC10458763)

Dee, K., Schultz, V. , Haney, J., Bissett, L. A. , Magill, C. and Murcia, P. R. (2023) Influenza A and respiratory syncytial virus trigger a cellular response that blocks severe acute respiratory syndrome virus 2 infection in the respiratory tract. Journal of Infectious Diseases, 227(12), pp. 1396-1406. (doi: 10.1093/infdis/jiac494) (PMID:36550077) (PMCID:PMC10266949)

Tyson, G. B., Jones, S., Logan, N., McDonald, M., Marshall, L., Murcia, P. R. , Willett, B. J. , Weir, W. and Hosie, M. J. (2023) SARS-CoV-2 seroprevalence and cross-variant antibody neutralization in cats, United Kingdom. Emerging Infectious Diseases, 29(6), pp. 1223-1227. (doi: 10.3201/eid2906.221755) (PMID:37141617) (PMCID:PMC10202862)

Manali, M. et al. (2023) SARS-CoV-2 evolution and patient immunological history shape the breadth and potency of antibody-mediated immunity. Journal of Infectious Diseases, 227(1), pp. 40-49. (doi: 10.1093/infdis/jiac332) (PMID:35920058) (PMCID:PMC9384671)

Martin, S., Ayling, M., Patrono, L., Caccamo, M., Murcia, P. and Leggett, R. M. (2023) Capturing variation in metagenomic assembly graphs with MetaCortex. Bioinformatics, 39(1), btad020. (doi: 10.1093/bioinformatics/btad020) (PMID:36722204) (PMCID:PMC9889960)

Tyson, G. B., Jones, S., Logan, N., McDonald, M., Murcia, P. R. , Willett, B. J. , Weir, W. and Hosie, M. J. (2022) Rising SARS-CoV-2 seroprevalence and patterns of cross-variant antibody neutralization in UK domestic cats. bioRxiv, (doi: 10.1101/2022.11.18.517046)

Haney, J., Vijayakrishnan, S. , Streetley, J. , Dee, K., Goldfarb, D. M., Clarke, M. , Mullin, M., Carter, S. D. , Bhella, D. and Murcia, P. R. (2022) Coinfection by influenza A virus and respiratory syncytial virus produces hybrid virus particles. Nature Microbiology, 7(11), pp. 1879-1890. (doi: 10.1038/s41564-022-01242-5) (PMID:36280786)

Willett, B. J. et al. (2022) Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway. Nature Microbiology, 7, 1709. (doi: 10.1038/s41564-022-01241-6) (PMID:36114232) (PMCID:PMC9483304)

Willett, B. J. et al. (2022) SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway. Nature Microbiology, 7(8), pp. 1161-1179. (doi: 10.1038/s41564-022-01143-7) (PMID:35798890) (PMCID:PMC9352574)

Whitlock, F., Murcia, P. R. and Newton, J. R. (2022) A review on equine influenza from a human influenza perspective. Viruses, 14(6), 1312. (doi: 10.3390/v14061312) (PMID:35746783) (PMCID:PMC9229935)

Willett, B. J. et al. (2022) Distinct antigenic properties of the SARS-CoV-2 Omicron lineages BA.4 and BA.5. bioRxiv, (doi: 10.1101/2022.05.25.493397)

Conley, M. J. et al. (2022) Helical ordering of envelope associated proteins and glycoproteins in respiratory syncytial virus. EMBO Journal, 41(3), e109728. (doi: 10.15252/embj.2021109728) (PMID:34935163) (PMCID:PMC8804925)

Amat, J. A.R. et al. (2021) Long-term adaptation following influenza A virus host shifts results in increased within-host viral fitness due to higher replication rates, broader dissemination within the respiratory epithelium and reduced tissue damage. PLoS Pathogens, 17(12), e1010174. (doi: 10.1371/journal.ppat.1010174) (PMID:34919598) (PMCID:PMC8735595)

Davis, C. et al. (2021) Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination. PLoS Pathogens, 17(12), e1010022. (doi: 10.1371/journal.ppat.1010022) (PMID:34855916) (PMCID:PMC8639073)

Herder, V. et al. (2021) Elevated temperature inhibits SARS-CoV-2 replication in respiratory epithelium independently of IFN-mediated innate immune defences. PLoS Biology, 19(12), e3001065. (doi: 10.1371/journal.pbio.3001065) (PMID:34932557) (PMCID:PMC8765667)

de Souza, W. M. et al. (2021) Paramyxoviruses from neotropical bats suggest a novel genus and nephrotropism. Infection, Genetics and Evolution, 95, 105041. (doi: 10.1016/j.meegid.2021.105041) (PMID:34411742)

Dee, K., Goldfarb, D. M., Haney, J., Amat, J. A.R., Herder, V. , Stewart, M., Szemiel, A. M., Baguelin, M. and Murcia, P. R. (2021) Human rhinovirus infection blocks SARS-CoV-2 replication within the respiratory epithelium: implications for COVID-19 epidemiology. Journal of Infectious Diseases, 224(1), pp. 31-38. (doi: 10.1093/infdis/jiab147) (PMID:33754149) (PMCID:PMC8083659)

Hosie, M. J. et al. (2021) Detection of SARS-CoV-2 in respiratory samples from cats in the UK associated with human-to-cat transmission. Veterinary Record, 188(8), e247. (doi: 10.1002/vetr.247) (PMID:33890314) (PMCID:PMC8251078)

Hughes, E. C. et al. (2021) Severe Acute Respiratory Syndrome Coronavirus 2 serosurveillance in a patient population reveals differences in virus exposure and antibody-mediated immunity according to host demography and healthcare setting. Journal of Infectious Diseases, 223(6), pp. 971-980. (doi: 10.1093/infdis/jiaa788) (PMID:33367847) (PMCID:PMC7798933)

Mollentze, N. , Streicker, D. G. , Murcia, P. R. , Hampson, K. and Biek, R. (2020) Virulence mismatches in index hosts shape the outcomes of cross-species transmission. Proceedings of the National Academy of Sciences of the United States of America, 117(46), pp. 28859-28866. (doi: 10.1073/pnas.2006778117) (PMID:33122433) (PMCID:PMC7682402)

Nickbakhsh, S. , Ho, A. , Marques, D. F.P., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2020) Reply to Li et al. Journal of Infectious Diseases, 222(4), pp. 696-698. (doi: 10.1093/infdis/jiaa322) (PMID:32497172)

Nickbakhsh, S. , Ho, A. , Marques, D. F.P., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2020) Epidemiology of seasonal coronaviruses: establishing the context for the emergence of coronavirus disease 2019. Journal of Infectious Diseases, 222(1), pp. 17-25. (doi: 10.1093/infdis/jiaa185) (PMID:32296837) (PMCID:PMC7184404)

Murcia, P. , Streiker, D. , Da Silva Filipe, A. , Robertson, D. , Jarrett, R. , Willett, B. , Hosie, M. , Biek, R. , Allan, K. and Weir, W. (2020) Send cat and dog samples to test for SARS-CoV-2. Veterinary Record, 186(17), p. 571. (doi: 10.1136/vr.m2019) (PMID:32451348)

Nickbakhsh, S. , Mair, C. , Matthews, L. , Reeve, R. , Johnson, P.C.D. , Thorburn, F., Von Wissmann, B., McMenamin, J., Gunson, R.N. and Murcia, P.R. (2020) Reply to Kloepfer and Gern: Independent studies suggest an arms race between influenza and rhinovirus: what next? Proceedings of the National Academy of Sciences of the United States of America, 117(13), pp. 6988-6989. (doi: 10.1073/pnas.2000903117) (PMID:32127475) (PMCID:PMC7132304)

Nickbakhsh, S. et al. (2019) Virus-virus interactions impact the population dynamics of influenza and the common cold. Proceedings of the National Academy of Sciences of the United States of America, 116(52), pp. 27142-27150. (doi: 10.1073/pnas.1911083116) (PMID:31843887) (PMCID:PMC6936719)

Mair, C. , Nickbakhsh, S. , Reeve, R. , McMenamin, J., Reynolds, A., Gunson, R. N., Murcia, P. R. and Matthews, L. (2019) Estimation of temporal covariances in pathogen dynamics using Bayesian multivariate autoregressive models. PLoS Computational Biology, 15(12), e1007492. (doi: 10.1371/journal.pcbi.1007492) (PMID:31834896) (PMCID:PMC6934324)

Fumagalli, M. J., de Souza, W. M., de Araujo, J., Modha, S. , Queiroz, L. H., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Krykféie dicistrovirus: a novel dicistrovirus in velvety free-tailed bats from Brazil. Infection, Genetics and Evolution, 75, 104036. (doi: 10.1016/j.meegid.2019.104036) (PMID:31499226)

Murcia, P.R. (2019) Clinical insights: the equine microbiome. Equine Veterinary Journal, 51(6), pp. 714-715. (doi: 10.1111/evj.13165) (PMID:31584723)

Blanco-Lobo, P., Rodriguez, L., Reedy, S., Oladunni, F. S., Nogales, A., Murcia, P. R. , Chambers, T. M. and Martinez-Sobrido, L. (2019) A bivalent live-attenuated vaccine for the prevention of equine influenza virus. Viruses, 11(10), e933. (doi: 10.3390/v11100933)

Maabar, M., Davison, A. J. , Vučak, M., Thorburn, F., Murcia, P. , Gunson, R., Palmarini, M. and Hughes, J. (2019) DisCVR: rapid viral diagnosis from high-throughput sequencing data. Virus Evolution, 5(2), vez033. (doi: 10.1093/ve/vez033) (PMID:31528358) (PMCID:PMC6735924)

de Souza, W. M., Fumagalli, M. J., de Araujo, J., Ometto, T., Modha, S. , Thomazelli, L. M., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil. Scientific Reports, 9, 5556. (doi: 10.1038/s41598-019-42110-3) (PMID:30944402) (PMCID:PMC6447618)

de Souza, W. M., Fumagalli, M. J., Sabino-Santos, G., Motta Maia, F. G., Modha, S. , Teixeira Nunes, M. R., Murcia, P. R. and Moraes Figueiredo, L. T. (2019) A novel Hepacivirus in wild rodents from South America. Viruses, 11(3), e297. (doi: 10.3390/v11030297) (PMID:30909631) (PMCID:PMC6466192)

Zhu, H. et al. (2019) Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds. PLoS Pathogens, 15(2), e1007531. (doi: 10.1371/journal.ppat.1007531) (PMID:30731004) (PMCID:PMC6366691)

Zhu, H., Gifford, R. and Murcia, P. R. (2018) Distribution, diversity and evolution of endogenous retroviruses in perissodactyl genomes. Journal of Virology, 92(23), e00927-18. (doi: 10.1128/JVI.00927-18) (PMID:30209175) (PMCID:PMC6232481)

Souza, W. M. d. et al. (2018) Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. Scientific Reports, 8, 16315. (doi: 10.1038/s41598-018-34630-1) (PMID:30397237) (PMCID:PMC6218518)

Maia, F. G. M., de Souza, W. M., Sabino-Santos, G., Fumagalli, M. J., Modha, S. , Murcia, P. R. and Figueiredo, L. T. M. (2018) A novel polyomavirus in sigmodontine rodents from São Paulo State, Brazil. Archives of Virology, 163(10), pp. 2913-2915. (doi: 10.1007/s00705-018-3913-8) (PMID:29931397)

Voorhees, I. E.H. et al. (2018) Multiple incursions and recurrent epidemic fade-out of H3N2 canine influenza A virus in the United States. Journal of Virology, 92(16), 00323-18. (doi: 10.1128/JVI.00323-18) (PMID:29875234) (PMCID:PMC6069211)

de Souza, W. M., Romeiro, M. F., Sabino-Santos, G., Maia, F. G. M., Fumagalli, M. J., Modha, S. , Nunes, M. R. T., Murcia, P. R. and Figueiredo, L. T. M. (2018) Novel orthohepeviruses in wild rodents from São Paulo State, Brazil. Virology, 519, pp. 12-16. (doi: 10.1016/j.virol.2018.03.025) (PMID:29627586) (PMCID:PMC5998382)

Chauché, C., Nogales, A., Zhu, H., Goldfarb, D., Shanizza A.I., A., Gu, Q. , Parrish, C.R., Martínez-Sobrido, L., Marshall, J.F. and Murcia, P.R. (2018) Mammalian adaptation of an avian influenza A virus involves stepwise changes in NS1. Journal of Virology, 92(5), e01875-17. (doi: 10.1128/JVI.01875-17) (PMID:29237841) (PMCID:PMC5809720)

Daly, J.M. and Murcia, P.R. (2018) Strategic implementation of vaccines for control of equine influenza. Equine Veterinary Journal, 50(2), pp. 153-154. (doi: 10.1111/evj.12794) (PMID:29392805)

Rodriguez, L., Reedy, S., Nogales, A., Murcia, P. R. , Chambers, T. M. and Martínez-Sobrido, L. (2018) Development of a novel equine influenza virus live-attenuated vaccine. Virology, 516, pp. 76-85. (doi: 10.1016/j.virol.2018.01.005) (PMID:29331866) (PMCID:PMC5840510)

de Souza, W. M. et al. (2018) Discovery of novel anelloviruses in small mammals expands the host range and diversity of the Anelloviridae. Virology, 514, pp. 9-17. (doi: 10.1016/j.virol.2017.11.001) (PMID:29128758)

Goldstein, E. J., Harvey, W. T., Wilkie, G. S., Shepherd, S. J., MacLean, A. R., Murcia, P. R. and Gunson, R. N. (2017) Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses. Microbial Genomics, 4, (doi: 10.1099/mgen.0.000137) (PMID:29310750) (PMCID:PMC5857367)

Nogales, A., Chauché, C., DeDiego, M. L., Topham, D. J., Parrish, C. R., Murcia, P. R. and Martínez-Sobrido, L. (2017) The K186E amino acid substitution in the canine influenza virus H3N8 NS1 protein restores its ability to inhibit host gene expression. Journal of Virology, 91(22), e00877-17. (doi: 10.1128/JVI.00877-17) (PMID:28835506)

Rodriguez, L., Nogales, A., Murcia, P. R. , Parrish, C. and Martínez-Sobrido, L. (2017) A bivalent live-attenuated influenza vaccine for the control and prevention of H3N8 and H3N2 canine influenza viruses. Vaccine, 35(34), pp. 4374-4381. (doi: 10.1016/j.vaccine.2017.06.060) (PMID:28709557)

Rodriguez, L., Nogales, A., Reilly, E. C., Topham, D. J., Murcia, P. R. , Parrish, C. R. and Martinez Sobrido, L. (2017) A live-attenuated influenza vaccine for H3N2 canine influenza virus. Virology, 504, pp. 96-106. (doi: 10.1016/j.virol.2017.01.020) (PMID:28167384)

de Souza, W. M., Romeiro, M. F., Modha, S. , de Araujo, J., Queiroz, L. H., Durigon, E. L., Moraes Figueiredo, L. T., Murcia, P. R. and Gifford, R. (2017) Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution. Journal of General Virology, 98(2), pp. 225-229. (doi: 10.1099/jgv.0.000671) (PMID:28284244) (PMCID:PMC5646239)

Nogales, A., Rodriguez, L., Chauché, C., Huang, K., Reilly, E. C., Topham, D. J., Murcia, P. R. , Parrish, C. R. and Martínez-Sobrido, L. (2017) A temperature sensitive live-attenuated canine influenza virus H3N8 vaccine. Journal of Virology, 91(4), e02211-16. (doi: 10.1128/JVI.02211-16) (PMID:27928017) (PMCID:PMC5286902)

Nogales, A., Huang, K., Chauché, C., DeDiego, M. L., Murcia, P. R. , Parrish, C. R. and Martínez-Sobrido, L. (2017) Canine influenza viruses with modified NS1 proteins for the development of live-attenuated vaccines. Virology, 500, pp. 1-10. (doi: 10.1016/j.virol.2016.10.008) (PMID:27750071)

Lipsitch, M. et al. (2016) Viral factors in influenza pandemic risk assessment. eLife, 5, e18491. (doi: 10.7554/eLife.18491) (PMID:27834632) (PMCID:PMC5156527)

Fusaro, A. et al. (2016) Unexpected interfarm transmission dynamics during a highly pathogenic avian influenza epidemic. Journal of Virology, 90(14), pp. 6401-6411. (doi: 10.1128/jvi.00538-16) (PMID:27147741) (PMCID:PMC4936132)

Nickbakhsh, S. , Thorburn, F., Von Wissmann, B., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2016) Extensive multiplex PCR diagnostics reveals new insights into the epidemiology of viral respiratory infections. Epidemiology and Infection, 144(10), pp. 2064-2076. (doi: 10.1017/S0950268816000339) (PMID:26931455)

Thorburn, F., Bennett, S., Modha, S., Murdoch, D., Gunson, R. and Murcia, P. (2015) Erratum to 'the use of next generation sequencing in the diagnosis and typing of respiratory infections' [J. Clin. Virol. 69 (2015) 96–100]. Journal of Clinical Virology, 70, p. 128. (doi: 10.1016/j.jcv.2015.06.101)

Brennan, B. et al. (2015) In memoriam – Richard M. Elliott (1954–2015). Journal of General Virology, 96(8), pp. 1975-1978. (doi: 10.1099/jgv.0.000241) (PMID:26315040)

Fusaro, A., Tassoni, L., Hughes, J. , Milani, A., Salviato, A., Schivo, A., Murcia, P. R. , Bonfanti, L., Cattoli, G. and Monne, I. (2015) Evolutionary trajectories of two distinct avian influenza epidemics: parallelisms and divergences. Infection, Genetics and Evolution, 34, pp. 457-466. (doi: 10.1016/j.meegid.2015.05.020) (PMID:26003682)

Thorburn, F., Bennett, S., Modha, S. , Murdoch, D., Gunson, R. and Murcia, P. R. (2015) The use of next generation sequencing in the diagnosis and typing of respiratory infections. Journal of Clinical Virology, 69, pp. 96-100. (doi: 10.1016/j.jcv.2015.06.082) (PMID:26209388) (PMCID:PMC4533236)

Feng, K. H. et al. (2015) Equine and canine influenza H3N8 viruses show minimal biological differences despite phylogenetic divergence. Journal of Virology, 89(13), pp. 6860-6873. (doi: 10.1128/JVI.00521-15) (PMID:25903329) (PMCID:PMC4468500)

Zhu, H., Hughes, J. and Murcia, P. R. (2015) Origins and evolutionary dynamics of H3N2 canine influenza virus. Journal of Virology, 89(10), pp. 5406-5418. (doi: 10.1128/JVI.03395-14) (PMID:25740996) (PMCID:PMC4442499)

Patrono, L. V., Bonfante, F., Zanardello, C., Terregino, C., Capua, I. and Murcia, P. R. (2015) Phylogenetically distinct equine influenza viruses show different tropism for the swine respiratory tract. Journal of General Virology, 96(5), pp. 969-974. (doi: 10.1099/vir.0.000049) (PMID:25593159) (PMCID:PMC4631061)

Parrish, C. R., Murcia, P. R. and Holmes, E. C. (2015) Influenza virus reservoirs and intermediate hosts: dogs, horses, and new possibilities for influenza virus exposure of humans. Journal of Virology, 89(6), pp. 2990-2994. (doi: 10.1128/JVI.03146-14) (PMID:25540375)

Chedom, D. F., Murcia, P. R. and Greenman, C. D. (2015) Inferring the clonal structure of viral populations from time series sequencing. PLoS Computational Biology, 11(11), e1004344. (doi: 10.1371/journal.pcbi.1004344) (PMID:26571026) (PMCID:PMC4646700)

Kao, R. R., Haydon, D. T. , Lycett, S. J. and Murcia, P. R. (2014) Supersize me: how whole-genome sequencing and big data are transforming epidemiology. Trends in Microbiology, 22(5), pp. 282-291. (doi: 10.1016/j.tim.2014.02.011)

Monne, I. et al. (2014) Emergence of a highly pathogenic avian influenza virus from a low-pathogenic progenitor. Journal of Virology, 88(8), pp. 4375-4388. (doi: 10.1128/JVI.03181-13)

Baker, K.S. et al. (2014) Viral antibody dynamics in a chiropteran host. Journal of Animal Ecology, 83(2), pp. 415-428. (doi: 10.1111/1365-2656.12153) (PMID:24111634)

Baker, K. S. and Murcia, P. R. (2014) Poxviruses in bats … so what? Viruses, 6(4), pp. 1564-1577. (doi: 10.3390/v6041564)

Gonzalez, G., Marshall, J. F., Morrell, J., Robb, D., McCauley, J. W., Perez, D. R., Parrish, C. R. and Murcia, P. R. (2014) Infection and pathogenesis of canine, equine and human influenza viruses in canine tracheas. Journal of Virology, 88(16), pp. 9208-9219. (doi: 10.1128/JVI.00887-14) (PMID:24899186) (PMCID:PMC4136294)

Baker, K.S. et al. (2013) Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus. Virology, 441(2), pp. 95-106. (doi: 10.1016/j.virol.2013.03.014)

Murcia, P.R. et al. (2013) Evolution of equine influenza virus in vaccinated horses. Journal of Virology, 87(8), pp. 4768-4771. (doi: 10.1128/JVI.03379-12)

Baker, K.S. et al. (2013) Novel, potentially zoonotic paramyxoviruses from the African straw-Colored fruit bat eidolon helvum. Journal of Virology, 87(3), pp. 1348-1358. (doi: 10.1128/JVI.01202-12)

Stack, J.C., Murcia, P.R. , Grenfell, B.T., Wood, J.L.N. and Holmes, E.C. (2013) Inferring the inter-host transmission of influenza A virus using patterns of intra-host genetic variation. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1750), p. 20122173. (doi: 10.1098/rspb.2012.2173)

Williamson, S. M., Tucker, A. W., McCrone, I. S., Bidewell, C. A., Brons, N., Habernoll, H., Essen, S. C., Brown, I. H., Wood, J. L. N. and Murcia, P. (2012) Descriptive clinical and epidemiological characteristics of influenza A H1N1 2009 virus infections in pigs in England. Veterinary Record, 171(11), p. 271. (doi: 10.1136/vr.100673) (PMID:22865115)

Cathcart, M.P. and Murcia, P.R. (2012) Hide and seek: diagnosing equine viral diseases using molecular biology techniques. Equine Veterinary Journal, 44(4), pp. 379-381. (doi: 10.1111/j.2042-3306.2012.00591.x)

Baker, K.S., Todd, S., Marsh, G., Fernandez-Loras, A., Suu-Ire, R., Wood, J.L.N., Wang, L.F., Murcia, P.R. and Cunningham, A.A. (2012) Co-circulation of diverse paramyxoviruses in an urban African fruit bat population. Journal of General Virology, 93(4), pp. 850-856. (doi: 10.1099/vir.0.039339-0)

Lefevre, E. A. et al. (2012) Immune responses in pigs vaccinated with adjuvanted and non-adjuvanted A(H1N1)pdm/09 influenza vaccines used in human immunization programmes. PLoS ONE, 7(3), e32400. (doi: 10.1371/journal.pone.0032400) (PMID:22427834) (PMCID:PMC3302873)

Hughes, J. et al. (2012) Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks. PLoS Pathogens, 8(12), e1003081. (doi: 10.1371/journal.ppat.1003081)

Murcia, P. R. et al. (2012) Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs. PLoS Pathogens, 8(5), e1002730. (doi: 10.1371/journal.ppat.1002730)

Murcia, P. R. and Wood, J. L. N. (2011) Equine influenza virus: a jumping virus that races with Thoroughbred horses and greyhounds. Veterinary Journal, 189(1), pp. 3-4. (doi: 10.1016/j.tvjl.2010.10.023) (PMID:21123098)

Murcia, P.R. , Wood, J.L.N. and Holmes, E.C. (2011) Genome-scale evolution and phylodynamics of equine H3N8 influenza A virus. Journal of Virology, 85(11), pp. 5312-5322. (doi: 10.1128/JVI.02619-10)

McKinley, T.J., Murcia, P.R. , Gog, J.R., Varela, M. and Wood, J.L.N. (2011) A Bayesian approach to analyse genetic variation within RNA viral populations. PLoS Computational Biology, 7(3), e1002027. (doi: 10.1371/journal.pcbi.1002027)

Murcia, P.R. et al. (2010) Intra- and interhost evolutionary dynamics of equine influenza virus. Journal of Virology, 84(14), pp. 6493-6454. (doi: 10.1128/JVI.00112-10)

Hoelzer, K., Murcia, P.R. , Baillie, G.J., Wood, J.L.N., Metzger, S.M., Osterrieder, N., Dubovi, E.J., Holmes, E.C. and Parrish, C.R. (2010) Intrahost evolutionary dynamics of canine influenza virus in naive and partially immune dogs. Journal of Virology, 84(10), pp. 5329-5335. (doi: 10.1128/​JVI.02469-09)

Nunes, S.F., Murcia, P.R. , Tiley, L.S., Brown, I.H., Tucker, A.W., Maskell, D.J. and Wood, J.L.N. (2010) An ex vivo swine tracheal organ culture for the study of influenza infection. Influenza and Other Respiratory Viruses, 4(1), pp. 7-15. (doi: 10.1111/j.1750-2659.2009.00119.x)

Heslin, D.J., Murcia, P. , Arnaud, F., Van Doorslaer, K., Palmarini, M. and Lenz, J. (2009) A single amino acid substitution in a segment of the CA protein within gag that has similarity to human immunodeficiency virus type 1 blocks infectivity of a human endogenous retrovirus K provirus in the human genome. Journal of Virology, 83(2), (doi: 10.1128/JVI.01439-08)

Murcia, P.R. , Delhon, G., Gonzalez, M.J., Vilas, M., Ramos-Vara, J.A., Heras, M.D.L., Nordhausen, R.W. and Uzal, F.A. (2008) Cluster of cases of malignant schwannoma in cattle. Veterinary Record, 163(11), pp. 331-335. (doi: 10.1136/vr.163.11.331)

De Las Heras Guillamon, M., Murcia, P. , Ortín, A., Azúa, J., Borderías, L., Álvarez, R., Jiménez-Más, J. A., Marchetti, A. and Palmarini, M. (2007) Jaagsiekte sheep retrovirus is not detected in human lung adenocarcinomas expressing antigens related to the Gag polyprotein of betaretrovirus. Cancer Letters, 258(1), pp. 22-30. (doi: 10.1016/j.canlet.2007.08.006) (PMID:17889995)

Arnaud, F., Murcia, P.R. and Palmarini, M. (2007) Mechanisms of late restriction induced by an endogenous retrovirus. Journal of Virology, 81(20), pp. 11441-11451. (doi: 10.1128/JVI.01214-07)

Murcia, P.R. , Arnaud, F. and Palmarini, M. (2007) The transdominant endogenous retrovirus enJS56A1 associates with and blocks intracellular trafficking of Jaagsiekte sheep retrovirus Gag. Journal of Virology, 81(4), pp. 1762-1772. (doi: 10.1128/JVI.01859-06)

Varela, M., Chow, Y.H., Sturkie, C., Murcia, P.R. and Palmarini, M. (2006) Association of RON tyrosine kinase with the Jaagsiekte sheep retrovirus envelope glycoprotein. Virology, 350(2), pp. 347-357. (doi: 10.1016/j.virol.2006.01.040)

Mura, M., Murcia, P.R. , Caporale, M., Spencer, T.E., Nagashima, K., Rein, A. and Palmarini, M. (2004) Late viral interference induced by transdominant Gag of an endogenous retrovirus. Proceedings of the National Academy of Sciences of the United States of America, 101(30), pp. 11117-11122. (doi: 10.1073/pnas.0402877101)

Uzal, F. A., Delhon, G., Murcia, P. R. , De las Heras, M., Luján, L., Fernández Miyakawa, M.E., Morris, W.E. and Gonzalez, M.J. (2004) Ovine pulmonary adenomatosis in Patagonia, Argentina. Veterinary Research Communications, 28(2), pp. 159-170. (doi: 10.1023/B:VERC.0000012110.49600.12) (PMID:14992245)

Chow, Y.H.J., Alberti, A., Mura, M., Pretto, C., Murcia, P.R. , Albritton, L.M. and Palmarini, M. (2003) Transformation of rodent fibroblasts by the Jaagsiekte sheep retrovirus envelope is receptor independent and does not require the surface domain. Journal of Virology, 77(11), pp. 6341-6350. (doi: 10.1128/JVI.77.11.6341-6350.2003)

Delhon, G.A., Gonzalez, M.J. and Murcia, P.R. (2002) Susceptibility of sensory neurons to apoptosis following infection by bovine herpesvirus type 1. Journal of General Virology, 83(9), pp. 2257-2267.

Research Reports or Papers

Holgate, S. et al. (2020) Preparing for a challenging winter 2020/21. Technical Report. Academy of Medical Sciences, London.