Ms Sejal Modha
- Affiliate (School of Infection & Immunity)
email:
Sejal.Modha@glasgow.ac.uk
Wellcome Centre for Molecular Parasitology, B628, Sir Graeme Davies Building, 120 University Place, Glasgow
https://orcid.org/0000-0002-8440-885XPublications
2024
Blanco-Melo, D., Campbell, M. A., Zhu, H., Dennis, T. P., Modha, S. , Lytras, S., Hughes, J. , Gatseva, A. and Gifford, R. J. (2024) A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus fossil record. Genome Biology, 25(1), 120. (doi: 10.1186/s13059-024-03258-y) (PMID:38741126) (PMCID:PMC11089739)
2023
Blanco-Melo, D., Campbell, M. A., Zhu, H., Dennis, T. P.W., Modha, S. , Lytras, S., Hughes, J. , Gatseva, A. and Gifford, R. J. (2023) A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus ‘fossil record’. bioRxiv, (doi: 10.1101/2023.10.17.562709)
2022
Modha, S. , Robertson, D. L. , Hughes, J. and Orton, R. J. (2022) Quantifying and cataloguing unknown sequences within human microbiomes. mSystems, 7(2), e01468-21. (doi: 10.1128/msystems.01468-21) (PMID:35258340) (PMCID:PMC9052204)
2020
Martí-Carreras, J. et al. (2020) NCBI’s virus discovery codeathon: building “FIVE” —the Federated Index of Viral Experiments API index. Viruses, 12(12), 1424. (doi: 10.3390/v12121424) (PMID:33322070) (PMCID:PMC7764237)
2019
Fumagalli, M. J., de Souza, W. M., de Araujo, J., Modha, S. , Queiroz, L. H., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Krykféie dicistrovirus: a novel dicistrovirus in velvety free-tailed bats from Brazil. Infection, Genetics and Evolution, 75, 104036. (doi: 10.1016/j.meegid.2019.104036) (PMID:31499226)
Modha, S. , Hughes, J. , Bianco, G., Ferguson, H. M. , Helm, B., Tong, L., Wilkie, G. S., Kohl, A. and Schnettler, E. (2019) Metaviromics reveals unknown viral diversity in the biting midge Culicoides impunctatus. Viruses, 11(9), 865. (doi: 10.3390/v11090865) (PMID:31533247) (PMCID:PMC6784199)
Wignall-Fleming, E. B., Hughes, D. J., Vattipally, S. , Modha, S. , Goodbourn, S., Davison, A. J. and Randall, R. E. (2019) Analysis of paramyxovirus transcription and replication by high-throughput sequencing. Journal of Virology, 93(17), e00571-19. (doi: 10.1128/JVI.00571-19) (PMID:31189700) (PMCID:PMC6694822)
Hufsky, F. et al. (2019) The Third Annual Meeting of the European Virus Bioinformatics Center. Viruses, 11(5), 420. (doi: 10.3390/v11050420) (PMID:31060321) (PMCID:PMC6563321)
de Souza, W. M., Fumagalli, M. J., de Araujo, J., Ometto, T., Modha, S. , Thomazelli, L. M., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil. Scientific Reports, 9, 5556. (doi: 10.1038/s41598-019-42110-3) (PMID:30944402) (PMCID:PMC6447618)
de Souza, W. M., Fumagalli, M. J., Sabino-Santos, G., Motta Maia, F. G., Modha, S. , Teixeira Nunes, M. R., Murcia, P. R. and Moraes Figueiredo, L. T. (2019) A novel Hepacivirus in wild rodents from South America. Viruses, 11(3), e297. (doi: 10.3390/v11030297) (PMID:30909631) (PMCID:PMC6466192)
Cotmore, S. F. et al. (2019) ICTV virus taxonomy profile: Parvoviridae. Journal of General Virology, 100(3), pp. 367-368. (doi: 10.1099/jgv.0.001212) (PMID:30672729) (PMCID:PMC6537627)
2018
Souza, W. M. d. et al. (2018) Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. Scientific Reports, 8, 16315. (doi: 10.1038/s41598-018-34630-1) (PMID:30397237) (PMCID:PMC6218518)
Dunlop, J. I. et al. (2018) Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses of the Americas. PLoS Neglected Tropical Diseases, 12(10), e0006884. (doi: 10.1371/journal.pntd.0006884) (PMID:30372452) (PMCID:PMC6245839)
Maia, F. G. M., de Souza, W. M., Sabino-Santos, G., Fumagalli, M. J., Modha, S. , Murcia, P. R. and Figueiredo, L. T. M. (2018) A novel polyomavirus in sigmodontine rodents from São Paulo State, Brazil. Archives of Virology, 163(10), pp. 2913-2915. (doi: 10.1007/s00705-018-3913-8) (PMID:29931397)
Modha, S. , Thanki, A., Cotmore, S. F., Davison, A. J. and Hughes, J. (2018) ViCTree: an automated framework for taxonomic classification from protein sequences. Bioinformatics, 34(13), pp. 2195-2200. (doi: 10.1093/bioinformatics/bty099) (PMID:29474519) (PMCID:PMC6022645)
de Souza, W. M., Romeiro, M. F., Sabino-Santos, G., Maia, F. G. M., Fumagalli, M. J., Modha, S. , Nunes, M. R. T., Murcia, P. R. and Figueiredo, L. T. M. (2018) Novel orthohepeviruses in wild rodents from São Paulo State, Brazil. Virology, 519, pp. 12-16. (doi: 10.1016/j.virol.2018.03.025) (PMID:29627586) (PMCID:PMC5998382)
de Souza, W. M. et al. (2018) Novel parvoviruses from wild and domestic animals in Brazil provide new insights into parvovirus distribution and diversity. Viruses, 10(4), 143. (doi: 10.3390/v10040143) (PMID:29565808) (PMCID:PMC5923437)
de Souza, W. M. et al. (2018) Discovery of novel anelloviruses in small mammals expands the host range and diversity of the Anelloviridae. Virology, 514, pp. 9-17. (doi: 10.1016/j.virol.2017.11.001) (PMID:29128758)
2017
de Souza, W. M., Romeiro, M. F., Modha, S. , de Araujo, J., Queiroz, L. H., Durigon, E. L., Moraes Figueiredo, L. T., Murcia, P. R. and Gifford, R. (2017) Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution. Journal of General Virology, 98(2), pp. 225-229. (doi: 10.1099/jgv.0.000671) (PMID:28284244) (PMCID:PMC5646239)
2016
Orton, R.J. , Gu, Q. , Hughes, J. , Maabar, M., Modha, S. , Vattipally, S. , Wilkie, G.S. and Davison, A. (2016) Bioinformatics tools for analysing viral genomic data. Revue scientifique et technique (International Office of Epizootics), 35(1), pp. 241-285. (doi: 10.20506/rst.35.1.2432) (PMID:27217183)
2015
Thorburn, F., Bennett, S., Modha, S. , Murdoch, D., Gunson, R. and Murcia, P. R. (2015) The use of next generation sequencing in the diagnosis and typing of respiratory infections. Journal of Clinical Virology, 69, pp. 96-100. (doi: 10.1016/j.jcv.2015.06.082) (PMID:26209388) (PMCID:PMC4533236)
Articles
Blanco-Melo, D., Campbell, M. A., Zhu, H., Dennis, T. P., Modha, S. , Lytras, S., Hughes, J. , Gatseva, A. and Gifford, R. J. (2024) A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus fossil record. Genome Biology, 25(1), 120. (doi: 10.1186/s13059-024-03258-y) (PMID:38741126) (PMCID:PMC11089739)
Blanco-Melo, D., Campbell, M. A., Zhu, H., Dennis, T. P.W., Modha, S. , Lytras, S., Hughes, J. , Gatseva, A. and Gifford, R. J. (2023) A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus ‘fossil record’. bioRxiv, (doi: 10.1101/2023.10.17.562709)
Modha, S. , Robertson, D. L. , Hughes, J. and Orton, R. J. (2022) Quantifying and cataloguing unknown sequences within human microbiomes. mSystems, 7(2), e01468-21. (doi: 10.1128/msystems.01468-21) (PMID:35258340) (PMCID:PMC9052204)
Martí-Carreras, J. et al. (2020) NCBI’s virus discovery codeathon: building “FIVE” —the Federated Index of Viral Experiments API index. Viruses, 12(12), 1424. (doi: 10.3390/v12121424) (PMID:33322070) (PMCID:PMC7764237)
Fumagalli, M. J., de Souza, W. M., de Araujo, J., Modha, S. , Queiroz, L. H., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Krykféie dicistrovirus: a novel dicistrovirus in velvety free-tailed bats from Brazil. Infection, Genetics and Evolution, 75, 104036. (doi: 10.1016/j.meegid.2019.104036) (PMID:31499226)
Modha, S. , Hughes, J. , Bianco, G., Ferguson, H. M. , Helm, B., Tong, L., Wilkie, G. S., Kohl, A. and Schnettler, E. (2019) Metaviromics reveals unknown viral diversity in the biting midge Culicoides impunctatus. Viruses, 11(9), 865. (doi: 10.3390/v11090865) (PMID:31533247) (PMCID:PMC6784199)
Wignall-Fleming, E. B., Hughes, D. J., Vattipally, S. , Modha, S. , Goodbourn, S., Davison, A. J. and Randall, R. E. (2019) Analysis of paramyxovirus transcription and replication by high-throughput sequencing. Journal of Virology, 93(17), e00571-19. (doi: 10.1128/JVI.00571-19) (PMID:31189700) (PMCID:PMC6694822)
Hufsky, F. et al. (2019) The Third Annual Meeting of the European Virus Bioinformatics Center. Viruses, 11(5), 420. (doi: 10.3390/v11050420) (PMID:31060321) (PMCID:PMC6563321)
de Souza, W. M., Fumagalli, M. J., de Araujo, J., Ometto, T., Modha, S. , Thomazelli, L. M., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil. Scientific Reports, 9, 5556. (doi: 10.1038/s41598-019-42110-3) (PMID:30944402) (PMCID:PMC6447618)
de Souza, W. M., Fumagalli, M. J., Sabino-Santos, G., Motta Maia, F. G., Modha, S. , Teixeira Nunes, M. R., Murcia, P. R. and Moraes Figueiredo, L. T. (2019) A novel Hepacivirus in wild rodents from South America. Viruses, 11(3), e297. (doi: 10.3390/v11030297) (PMID:30909631) (PMCID:PMC6466192)
Cotmore, S. F. et al. (2019) ICTV virus taxonomy profile: Parvoviridae. Journal of General Virology, 100(3), pp. 367-368. (doi: 10.1099/jgv.0.001212) (PMID:30672729) (PMCID:PMC6537627)
Souza, W. M. d. et al. (2018) Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. Scientific Reports, 8, 16315. (doi: 10.1038/s41598-018-34630-1) (PMID:30397237) (PMCID:PMC6218518)
Dunlop, J. I. et al. (2018) Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses of the Americas. PLoS Neglected Tropical Diseases, 12(10), e0006884. (doi: 10.1371/journal.pntd.0006884) (PMID:30372452) (PMCID:PMC6245839)
Maia, F. G. M., de Souza, W. M., Sabino-Santos, G., Fumagalli, M. J., Modha, S. , Murcia, P. R. and Figueiredo, L. T. M. (2018) A novel polyomavirus in sigmodontine rodents from São Paulo State, Brazil. Archives of Virology, 163(10), pp. 2913-2915. (doi: 10.1007/s00705-018-3913-8) (PMID:29931397)
Modha, S. , Thanki, A., Cotmore, S. F., Davison, A. J. and Hughes, J. (2018) ViCTree: an automated framework for taxonomic classification from protein sequences. Bioinformatics, 34(13), pp. 2195-2200. (doi: 10.1093/bioinformatics/bty099) (PMID:29474519) (PMCID:PMC6022645)
de Souza, W. M., Romeiro, M. F., Sabino-Santos, G., Maia, F. G. M., Fumagalli, M. J., Modha, S. , Nunes, M. R. T., Murcia, P. R. and Figueiredo, L. T. M. (2018) Novel orthohepeviruses in wild rodents from São Paulo State, Brazil. Virology, 519, pp. 12-16. (doi: 10.1016/j.virol.2018.03.025) (PMID:29627586) (PMCID:PMC5998382)
de Souza, W. M. et al. (2018) Novel parvoviruses from wild and domestic animals in Brazil provide new insights into parvovirus distribution and diversity. Viruses, 10(4), 143. (doi: 10.3390/v10040143) (PMID:29565808) (PMCID:PMC5923437)
de Souza, W. M. et al. (2018) Discovery of novel anelloviruses in small mammals expands the host range and diversity of the Anelloviridae. Virology, 514, pp. 9-17. (doi: 10.1016/j.virol.2017.11.001) (PMID:29128758)
de Souza, W. M., Romeiro, M. F., Modha, S. , de Araujo, J., Queiroz, L. H., Durigon, E. L., Moraes Figueiredo, L. T., Murcia, P. R. and Gifford, R. (2017) Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution. Journal of General Virology, 98(2), pp. 225-229. (doi: 10.1099/jgv.0.000671) (PMID:28284244) (PMCID:PMC5646239)
Orton, R.J. , Gu, Q. , Hughes, J. , Maabar, M., Modha, S. , Vattipally, S. , Wilkie, G.S. and Davison, A. (2016) Bioinformatics tools for analysing viral genomic data. Revue scientifique et technique (International Office of Epizootics), 35(1), pp. 241-285. (doi: 10.20506/rst.35.1.2432) (PMID:27217183)
Thorburn, F., Bennett, S., Modha, S. , Murdoch, D., Gunson, R. and Murcia, P. R. (2015) The use of next generation sequencing in the diagnosis and typing of respiratory infections. Journal of Clinical Virology, 69, pp. 96-100. (doi: 10.1016/j.jcv.2015.06.082) (PMID:26209388) (PMCID:PMC4533236)