Dr Arianne Babina

  • Lecturer in Bacteriology (Bacteriology)

telephone: 01413306685
email: Arianne.Babina@glasgow.ac.uk
pronouns: She/her/hers

B223 Sir Graeme Davies Building, 120 University Place, Glasgow, Scotland, United Kingdom, G12 8TA

Import to contacts

ORCID iDhttps://orcid.org/0000-0002-4635-8396

Biography

Much of my work has thematically focused on examining the mechanisms and evolution of different gene regulatory interactions across diverse organisms (plants, archaea, and both Gram positive and Gram negative bacteria).

I completed my PhD at Boston College (Chestnut Hill, MA, USA) under the supervision of Prof. Michelle M. Meyer. My thesis work investigated the in vivo behavior and fitness contributions of two unique cis-regulatory RNAs in Bacillus subtilis (the glycine riboswitch and the L20-interacting RNA leader) to gain insight into the factors influencing the emergence, evolution, and maintenance of structured regulatory RNAs in bacterial genomes.

After my PhD, I joined Prof. Dan I. Andersson's research group at Uppsala University (Uppsala, Sweden) as a Postdoctoral Researcher and later advanced to the role of Researcher within the team. During my time at Uppsala, I participated in a multidisciplinary collaboration focused on studying the de novo origins of new genes, particularly exploring how randomized DNA sequences can acquire novel gene regulatory functions through RNA-RNA, RNA-protein, or protein-protein interactions. This work led to the discovery of new antibiotic resistance genes and RNA-binding small proteins in Escherichia coli. Additionally, I investigated the molecular mechanisms underlying the emergence of antibiotic heteroresistance within bacterial populations.

My current research as a Lecturer in Bacteriology at the University of Glasgow builds upon my previous work, with a focus on how de novo genes can rewire gene regulatory networks within bacterial genomes.

Research interests

The evolution of gene regulatory networks is central to bacterial adaptation to new environments and ecological niches, including the development of antimicrobial resistance and the adaptation of emerging pathogens to new hosts. My research group integrates molecular genetics, biochemistry, experimental evolution, and large-scale “-omics” approaches to comprehensively study how bacterial gene regulatory networks originate and adapt over time under diverse conditions. We particularly focus on how novel gene regulatory interactions (i.e. novel noncoding RNAs and small proteins) can emerge de novo, or from scratch,  from previously non-functional or non-coding DNA sequences. By examining how environmental changes shape the evolutionary trajectories of novel gene regulatory interactions within bacterial genomes, we aim to better understand how bacteria evolve to survive in a rapidly changing world, including how bacterial pathogens adapt to treatment, new hosts, or intra-host environments.

We are also broadly interested in the de novo origins of new genes and developing experimental approaches in different bacteria to further explore the diversity of novel functions encoded within random sequence space.

Google Scholar publication list

Publications

List by: Type | Date

Jump to: 2024 | 2023
Number of items: 2.

2024

Babina, A. M. , Kirsebom, L. A. and Andersson, D. I. (2024) Suppression of the Escherichia coli rnpA49 conditionally lethal phenotype by different compensatory mutationS. RNA, 30(9), pp. 977-991. (doi: 10.1261/rna.079909.123) (PMID:38688559) (PMCID:PMC11251521)

2023

Babina, A. M. , Surkov, S., Ye, W., Jerlström-Hultqvist, J., Larsson, M., Holmqvist, E., Jemth, P., Andersson, D. I. and Knopp, M. (2023) Rescue of Escherichia coli auxotrophy by de novo small proteins. eLife, 12, e78299. (doi: 10.7554/eLife.78299) (PMID:36920032) (PMCID:PMC10065794)

This list was generated on Wed Dec 18 22:11:43 2024 GMT.
Jump to: Articles
Number of items: 2.

Articles

Babina, A. M. , Kirsebom, L. A. and Andersson, D. I. (2024) Suppression of the Escherichia coli rnpA49 conditionally lethal phenotype by different compensatory mutationS. RNA, 30(9), pp. 977-991. (doi: 10.1261/rna.079909.123) (PMID:38688559) (PMCID:PMC11251521)

Babina, A. M. , Surkov, S., Ye, W., Jerlström-Hultqvist, J., Larsson, M., Holmqvist, E., Jemth, P., Andersson, D. I. and Knopp, M. (2023) Rescue of Escherichia coli auxotrophy by de novo small proteins. eLife, 12, e78299. (doi: 10.7554/eLife.78299) (PMID:36920032) (PMCID:PMC10065794)

This list was generated on Wed Dec 18 22:11:43 2024 GMT.

Prior publications

ORCiD

Arianne M. Babina, Leif A. Kirsebom, Dan I. Andersson, (2023) Suppression of theE.coli rnpA49conditionally lethal phenotype via different compensatory mutations (doi: 10.1101/2023.12.05.570125); source: Crossref

Michael Knopp, Carmen Buchrieser, Arianne M. Babina, Jónína S. Gudmundsdóttir, Martin V. Douglass, M. Stephen Trent, Dan I. Andersson, (2021) A novel type of colistin resistance genes selected from random sequence space PLOS Genetics (doi: 10.1371/journal.pgen.1009227); source: Crossref

Arianne M. Babina, Darren J. Parker, Gene-Wei Li, Michelle Meyer, (2018) Fitness advantages conferred by the L20-interacting RNA cis-regulator of ribosomal protein synthesis in Bacillus subtilis RNA (doi: 10.1261/rna.065011.117)(issn: 1355-8382)(issn: 1469-9001); source: Arianne Babina

Arianne M. Babina, Nicholas E. Lea, Michelle Meyer, (2017) In Vivo Behavior of the Tandem Glycine Riboswitch in Bacillus subtilis mBio (doi: 10.1128/mbio.01602-17)(issn: 2161-2129)(issn: 2150-7511); source: Arianne Babina

Arianne M. Babina, Mark W. Soo, Yang Fu, Michelle M. Meyer, (2015) An S6:S18 complex inhibits translation of E. coli rpsF RNA (doi: 10.1261/rna.049544.115)(issn: 1355-8382)(issn: 1469-9001); source: Arianne Babina

Stéphane Bentolila, Arianne M Babina, Arnaud Germain, Maureen R Hanson, (2013) Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria RNA Biology (doi: 10.4161/rna.25297)(issn: 1547-6286)(issn: 1555-8584); source: Arianne Babina

Stephane Bentolila, Wade P. Heller, Tao Sun, Arianne M. Babina, Giulia Friso, Klaas J. van Wijk, Maureen R. Hanson, (2012) RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing Proceedings of the National Academy of Sciences (doi: 10.1073/pnas.1121465109)(issn: 0027-8424)(issn: 1091-6490); source: Arianne Babina

J. Yuan, T. Gogakos, A. M. Babina, D. Soll, L. Randau, (2011) Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair Nucleic Acids Research (doi: 10.1093/nar/gkq1176)(issn: 0305-1048)(issn: 1362-4962); source: Arianne Babina