Dr Umer Ijaz

Reader in Information Engineering (Infrastructure & Environment)

telephone: 6458
email: Umer.Ijaz@glasgow.ac.uk

School of Engineering, Rankine Building

Publications

List by: Type | Date

Jump to: 2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006

Number of items: 157.

2024

Ameer, A., Saleem, F., Keating, C. , Gundogdu, O., Ijaz, U. and Javed, S. (2024) Dataset of 16S rRNA gene sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan. Data In Brief, 57, 110957. (doi: 10.1016/j.dib.2024.110957)

Stewart, K., Boerlage, A. S., Barr, W., Ijaz, U. Z. and Smith, C. (2024) Hatchery type influences the gill microbiome of Atlantic farmed salmon (Salmo salar) after transfer to sea. Animal Microbiome, 6, 65. (doi: 10.1186/s42523-024-00347-y) (PMID:39516952) (PMCID:PMC11549768)

Keating, C. , Kilbride, E., Stalham, M. A., Nellist, C., Milner, J. , Humphris, S., Toth, I. , Mable, B. K. and Ijaz, U. Z. (2024) Balancing the scales: assessing the impact of irrigation and pathogen burden on potato blackleg disease and soil microbial communities. Microbiome, 12, 210. (doi: 10.1186/s40168-024-01918-6)

Nichols, B. et al. (2024) Gut microbial signatures in pediatric Crohn's disease vary according to disease activity measures and are influenced by proxies of gastrointestinal transit time: an ImageKids study. Inflammatory Bowel Diseases, (doi: 10.1093/ibd/izae199) (Early Online Publication)

Ashraf, H., Dikarlo, P., Masia, A., Zarbo, I. R., Solla, P., Ijaz, U. Z. and Sechi, L. A. (2024) Mycobacterium avium subspecies paratuberculosis (MAP) infection, and its impact on gut microbiome of individuals with Multiple Sclerosis. Scientific Reports, 14, 24027. (doi: 10.1038/s41598-024-74975-4)

Cholet, F., Agogué, H., Ijaz, U. Z. , Lachaussée, N., Pineau, P. and Smith, C. J. (2024) Low-abundant but highly transcriptionally active uncharacterised Nitrosomonas drive ammonia-oxidation in the Brouage mudflat, France. Science of the Total Environment, 946, 174312. (doi: 10.1016/j.scitotenv.2024.174312) (PMID:38936706)

Bibi, S., Kerbiriou, C., Uzma, , Mckirdy, S., Kostrytsia, A. , Rasheed, H., Eqani, S. A. M. A. S., Gerasimidis, K. , Nurulain, S. M. and Ijaz, U. Z. (2024) Gut microbiome and function are altered for individuals living in high fluoride concentration areas in Pakistan. Ecotoxicology and Environmental Safety, 284, 116959. (doi: 10.1016/j.ecoenv.2024.116959) (PMID:39232295)

Martin, S., Smith, C. , Stewart, K., Barr, W., Cheslett, D., O'Connor, I., Swords, F., Ijaz, U. Z. and O'Dwyer, K. (2024) The hepatopancreas microbiome of velvet crab, Necora puber. Environmental Microbiology Reports, 16(5), e70014. (doi: 10.1111/1758-2229.70014) (PMID:39354672)

Shi, X. et al. (2024) Microbial stratification and DOM removal in drinking water biofilters: implications for enhanced performance. Water Research, 262, 122053. (doi: 10.1016/j.watres.2024.122053)

Trego, A., O'Sullivan, S., O'Flaherty, V., Collins, G. and Ijaz, U. Z. (2024) Individual methanogenic granules are whole-ecosystem replicates with reproducible responses to environmental cues. Environmental Microbiome, 19, 68. (doi: 10.1186/s40793-024-00615-z) (PMID:39252061)

Trego, A., Palmeiro-Sánchez, T., Graham, A., Ijaz, U. Z. and O'Flaherty, V. (2024) First evidence for temperature influencing the enrichment, assembly and activity of polyhydroxyalkanoate-synthesizing mixed microbial communities. Frontiers in Systems Biology, 4, 1375472. (doi: 10.3389/fsysb.2024.1375472)

Aqueel, R., Badar, A., Roy, N., Ijaz, U. Z. and Malik, K. A. (2024) Disease resistance correlates with core microbiome diversity in cotton. Current Microbiology, 81(9), 302. (doi: 10.1007/s00284-024-03827-1) (PMID:39115581)

Ashraf, H., Dikarlo, P., Masia, A., Zarbo, I. R., Solla, P., Ijaz, U. Z. and Sechi, L. A. (2024) Network analysis of gut microbial communities reveal key genera for a multiple sclerosis cohort with Mycobacterium avium subspecies paratuberculosis infection. Gut Pathogens, 16(1), 37. (doi: 10.1186/s13099-024-00627-7) (PMID:38987816) (PMCID:PMC11238521)

Corbett, E., Ijaz, U. Z. , Jackson, I. and Phoenix, V. R. (2024) Stormwater quality and microbial ecology in an urban rain garden system. Frontiers in Water, 6, 1383382. (doi: 10.3389/frwa.2024.1383382)

Koci, O., Russell, R. K., Shaikh, M. G., Edwards, C. , Gerasimidis, K. and Ijaz, U. Z. (2024) CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets. Microbiome, 12(1), 117. (doi: 10.1186/s40168-024-01834-9) (PMID:38951915) (PMCID:PMC11218139)

Aqueel, R., Badar, A., Ijaz, U. and Malik, A. K. (2024) Microbial influencers and Cotton Leaf Curl Disease (CLCuD) susceptibility: a network perspective. Frontiers in Microbiology, 15, 1381883. (doi: 10.3389/fmicb.2024.1381883)

Ameer, A., Saleem, F., Keating, C. , Gundogdu, O., Ijaz, U. Z. and Javed, S. (2024) Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data In Brief, 54, 110487. (doi: 10.1016/j.dib.2024.110487)

Saleem, F., Ameer, A., Star-Shirko, B., Keating, C. , Gundogdu, O., Ijaz, U. Z. and Javed, S. (2024) Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan. Data In Brief, 54, 110552. (doi: 10.1016/j.dib.2024.110552)

Nichols, B. et al. (2024) Gut metabolome and microbiota signatures predict response to treatment with exclusive enteral nutrition in a prospective study in children with active Crohn’s disease. American Journal of Clinical Nutrition, 119(4), pp. 885-895. (doi: 10.1016/j.ajcnut.2023.12.027) (PMID:38569785) (PMCID:PMC11007740)

Gul, F., Herrema, H., Davids, M., Keating, C. , Nasir, A., Ijaz, U. Z. and Javed, S. (2024) Gut microbial ecology and exposome of a healthy Pakistani cohort. Gut Pathogens, 16, 5. (doi: 10.1186/s13099-024-00596-x)

2023

Aqueel, R., Badar, A., Roy, N., Mushtaq, Q., Ali, A. F., Bashir, A., Ijaz, U. Z. and Malik, K. A. (2023) Cotton microbiome profiling and Cotton Leaf Curl Disease (CLCuD) suppression through microbial consortia associated. npj Biofilms and Microbiomes, 9(1), 100. (doi: 10.1038/s41522-023-00470-9) (PMID:38097579) (PMCID:PMC10721634)

Okonkwo, V., Cholet, F., Ijaz, U. Z. , Koottatep, T., Pussayanavin, T., Polpraset, C., Sloan, W. T. , Connelly, S. and Smith, C. J. (2023) intI1 gene abundance from septic tanks in Thailand using validated intI1 primers. Applied and Environmental Microbiology, 89(11), e01071-23. (doi: 10.1128/aem.01071-23) (PMID:37874304) (PMCID:PMC10686061)

Craven, H., Erlandsson, H., McGuinness, D., McGuinness, D. , Mafra, D., Ijaz, U. Z. , Bergman, P., Shiels, P. G. and Stenvinkel, P. (2023) A normative microbiome is not restored following kidney transplantation. Clinical Science, 137(20), pp. 1563-1575. (doi: 10.1042/CS20230779) (PMID:37756543)

Vignola, M. , Lenselink, J., Quinn, D., Ijaz, U. Z. , Pereira, R., Sloan, W. T. , Connelly, S. , Moore, G., Gauchotte-Lindsay, C. and Smith, C. J. (2023) Differential utilisation of dissolved organic matter compound fractions by different biofilter microbial communities. AQUA: Water Infrastructure, Ecosystems and Society, 72(10), pp. 1837-1851. (doi: 10.2166/aqua.2023.036)

Dessì, P., Buenaño, C., Martínez-Sosa, S., Mills, S., Trego, A., Ijaz, U. Z. , Pant, D., Puig, S., O'Flaherty, V. and Farràs, P. (2023) Microbial electrosynthesis of acetate from CO2 in three-chamber cells with gas diffusion biocathode under moderate saline conditions. Environmental Science and Ecotechnology, 16, 100261. (doi: 10.1016/j.ese.2023.100261)

Ameer, A., Cheng, Y., Saleem, F., Uzma, , McKenna, A., Richmond, A., Gundogdu, O., Sloan, W. T. , Javed, S. and Ijaz, U. Z. (2023) Temporal stability and community assembly mechanisms in healthy broiler cecum. Frontiers in Microbiology, 14, 1197838. (doi: 10.3389/fmicb.2023.1197838) (PMID:37779716) (PMCID:PMC10534011)

Singh, S., Keating, C. , Ijaz, U. Z. and Hassard, F. (2023) Molecular insights informing factors affecting low temperature anaerobic applications: diversity, collated core microbiomes and complexity stability relationships in LCFA-fed systems. Science of the Total Environment, 874, 162420. (doi: 10.1016/j.scitotenv.2023.162420) (PMID:36842571)

Aziz, I., Noreen, Z., Ijaz, U. Z. , Gundogdu, O., Hamid, M. H., Muhammad, N., Khan, A. and Bokhari, H. (2023) A prospective study on linking diarrheagenic E. coli with stunted childhood growth in relation to gut microbiome. Scientific Reports, 13, 6802. (doi: 10.1038/s41598-023-32491-x)

Bach, L. , Ram, A., Ijaz, U. Z. , Evans, T. J. , Haydon, D. T. and Lindström, J. (2023) The effects of smoking on human pharynx microbiota composition and stability. Microbiology Spectrum, 11(2), e02166-21. (doi: 10.1128/spectrum.02166-21) (PMID:36786634) (PMCID:PMC10101099)

Batool, M., Keating, C. , Javed, S., Nasir, A., Muddassar, M. and Ijaz, U. Z. (2023) A cross-sectional study of potential antimicrobial resistance and ecology in gastrointestinal and oral microbial communities of young normoweight Pakistani individuals. Microorganisms, 11(2), 279. (doi: 10.3390/microorganisms11020279) (PMID:36838244) (PMCID:PMC9965051)

2022

Carboni, M. F., Mills, S., Arriaga, S., Collins, G., Ijaz, U. Z. and Lens, P. N.L. (2022) Autotrophic denitrification of nitrate rich wastewater in fluidized bed reactors using pyrite and elemental sulfur as electron donors. Environmental Technology and Innovation, 28, 102878. (doi: 10.1016/j.eti.2022.102878)

Bain, K. A., Nichols, B., Kerbiriou, C., Moffat, F., Ijaz, U. Z. , Gerasimidis, K. , McInnes, I. B. , Åstrand, A., Holmes, S. and Milling, S. W. F. (2022) Stratification of alopecia areata reveals involvement of CD4 T cell populations and altered faecal microbiota. Clinical and Experimental Immunology, 210(2), pp. 175-186. (doi: 10.1093/cei/uxac088) (PMID:36200950) (PMCID:PMC9750826)

Birlanga, V. B., McCormack, G., Ijaz, U. Z. , MacCarthy, E., Smith, C. and Collins, G. (2022) Dynamic gill and mucus microbiomes during a gill disease episode in farmed Atlantic salmon. Scientific Reports, 12, 16719. (doi: 10.1038/s41598-022-17008-2) (PMID:36202859) (PMCID:PMC9537138)

Trego, A., Keating, C. , Nzeteu, C., Graham, A., O'Flaherty, V. and Ijaz, U. Z. (2022) Beyond basic diversity estimates – analytical tools for mechanistic interpretations of amplicon sequencing data. Microorganisms, 10(10), 1961. (doi: 10.3390/microorganisms10101961) (PMID:36296237) (PMCID:PMC9609705)

Ijaz, U. Z. et al. (2022) Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate. Frontiers in Microbiology, 13, 960747. (doi: 10.3389/fmicb.2022.960747) (PMID:36212864) (PMCID:PMC9539666)

Mills, S., Dessì, P., Pant, D., Farràs, P., Sloan, W. T. , Collins, G. and Ijaz, U. Z. (2022) A meta-analysis of acetogenic and methanogenic microbiomes in microbial electrosynthesis. npj Biofilms and Microbiomes, 8, 73. (doi: 10.1038/s41522-022-00337-5) (PMID:36138044) (PMCID:PMC9500080)

Cholet, F., Lisik, A., Agogué, H., Ijaz, U. Z. , Pineau, P., Lachaussée, N. and Smith, C. J. (2022) Ecological observations based on functional gene sequencing are sensitive to the amplicon processing method. mSphere, 7(4), e0032422. (doi: 10.1128/msphere.00324-22) (PMID:35938727) (PMCID:PMC9429940)

Yin, J., Chen, X., Li, X., Kang, G., Wang, P., Song, Y. , Ijaz, U. Z. , Yin, H. and Huang, H. (2022) A droplet-based microfluidic approach to isolating functional bacteria from gut microbiota. Frontiers in Cellular and Infection Microbiology, 12, 920986. (doi: 10.3389/fcimb.2022.920986)

Kazlauskaite, R. et al. (2022) Deploying an in vitro gut model to assay the impact of the mannan-oligosaccharide prebiotic bio-mos on the Atlantic Salmon (Salmo salar) gut microbiome. Microbiology Spectrum, 10(3), e0195321. (doi: 10.1128/spectrum.01953-21) (PMID:35532227) (PMCID:PMC9241627)

Logan, M. , Mackinder, M., Clark, C. M., Kountouri, A., Jere, M., Ijaz, U. Z. , Hansen, R., McGrogan, P., Russell, R. K. and Gerasimidis, K. (2022) Intestinal fatty acid binding protein is a disease biomarker in paediatric coeliac disease and Crohn’s disease. BMC Gastroenterology, 22, 260. (doi: 10.1186/s12876-022-02334-6) (PMID:35606704) (PMCID:PMC9125891)

Keating, C. , Bolton-Warberg, M., Hinchcliffe, J., Davies, R., Whelan, S., Wan, A.H.L., Fitzgerald, R.D., Davies, S.J., Smith, C.J. and Ijaz, U.Z. (2022) Drivers of ecological assembly in the hindgut of Atlantic Cod fed a macroalgal supplemented diet. npj Biofilms and Microbiomes, 8, 36. (doi: 10.1038/s41522-022-00296-x) (PMID:35508464) (PMCID:PMC9068720)

Thom, C., Smith, C. J. , Moore, G., Weir, P. and Ijaz, U. Z. (2022) Microbiomes in drinking water treatment and distribution: a meta-analysis from source to tap. Water Research, 212, 118106. (doi: 10.1016/j.watres.2022.118106) (PMID:35091225)

Khan, A., Akbar, S., Okonkwo, V., Smith, C. , Khan, S., Shah, A. A., Adnan, F., Ijaz, U. Z. , Ahmed, S. and Badshah, M. (2022) Enrichment of the hydrogenotrophic methanogens for, in-situ biogas up-gradation by recirculation of gases and supply of hydrogen in methanogenic reactor. Bioresource Technology, 345, 126219. (doi: 10.1016/j.biortech.2021.126219) (PMID:34813923)

Tatti, E., Duff, A., Kostrysia, A., Cholet, F., Ijaz, U. and Smith, C. (2022) Potential nitrification activity reflects ammonia oxidising bacteria but not archaea activity across a soil-sediment gradient. Estuarine, Coastal and Shelf Science, 264, 107666. (doi: 10.1016/j.ecss.2021.107666)

Kostrytsia, A., Papirio, S., Khodzhaev, M., Morrison, L., Collins, G., Lens, P. N.L., Ijaz, U. Z. and Esposito, G. (2022) Biofilm carrier type affects biogenic sulfur-driven denitrification performance and microbial community dynamics in moving-bed biofilm reactors. Chemosphere, 287(Part 1), 131975. (doi: 10.1016/j.chemosphere.2021.131975)

Rashid, A., Mirza, S. A., Keating, C. , Ijaz, U. Z. , Ali, S. and Campos, L. C. (2022) Machine learning approach to predict quality parameters for bacterial consortium-treated hospital wastewater and phytotoxicity assessment on radish, cauliflower, hot pepper, rice and wheat crops. Water, 14(1), 116. (doi: 10.3390/w14010116)

Singh, S., Rinta-Kanto, J. M., Lens, P. N. L., Kokko, M., Rintala, J., O’Flaherty, V., Ijaz, U. Z. and Collins, G. (2022) Microbial community assembly and dynamics in granular, fixed-biofilm and planktonic microbiomes valorizing long-chain fatty acids at 20ºC. Bioresource Technology, 343, 126098. (doi: 10.1016/j.biortech.2021.126098) (PMID:34626764)

2021

Gkikas, K. et al. (2021) Dietary triggers of gut inflammation following exclusive enteral nutrition in children with Crohn’s disease: a pilot study. BMC Gastroenterology, 21, 454. (doi: 10.1186/s12876-021-02029-4) (PMID:34861829)

Trego, A. C., Conall Holohan, B., Keating, C. , Graham, A., O'Connor, S., Gerardo, M., Hughes, D., Ijaz, U. Z. and O'Flaherty, V. (2021) First proof of concept for full-scale, direct, low-temperature anaerobic treatment of municipal wastewater. Bioresource Technology, 341, 125786. (doi: 10.1016/j.biortech.2021.125786) (PMID:34523560)

Oulas, A., Zachariou, M., Chasapis, C. T., Tomazou, M., Ijaz, U. Z. , Schmartz, G. P., Spyrou, G. M. and Vlamis-Gardikas, A. (2021) Putative antimicrobial peptides within bacterial proteomes affect bacterial predominance: a network analysis perspective. Frontiers in Microbiology, 12, 752674. (doi: 10.3389/fmicb.2021.752674)

Wright, P. B. et al. (2021) The mannose receptor (CD206) identifies a population of colonic macrophages in health and inflammatory bowel disease. Scientific Reports, 11, 19616. (doi: 10.1038/s41598-021-98611-7) (PMID:34608184) (PMCID:PMC8490356)

Kemp, J. A., Paiva, B. R., dos Santos, H. F., Jesus, H. E., Craven, H., Ijaz, U. Z. , Borges, N. A., Shiels, P. G. and Mafra, D. (2021) The impact of enriched resistant starch type‐2 cookies on the gut microbiome in hemodialysis patients: a randomized controlled trial. Molecular Nutrition and Food Research, 65(19), 2100374. (doi: 10.1002/mnfr.202100374) (PMID:34390604)

Nikolova, C., Ijaz, U. Z. and Gutierrez, T. (2021) Exploration of marine bacterioplankton community assembly mechanisms during chemical dispersant and surfactant‐assisted oil biodegradation. Ecology and Evolution, 11(20), pp. 13862-13874. (doi: 10.1002/ece3.8091) (PMCID:PMC8525123)

Nikolova, C. N., Ijaz, U. Z. , Magill, C., Kleindienst, S., Joye, S. B. and Gutierrez, T. (2021) Response and oil degradation activities of a northeast Atlantic bacterial community to biogenic and synthetic surfactants. Microbiome, 9(1), 191. (doi: 10.1186/s40168-021-01143-5) (PMID:34548108) (PMCID:PMC8456599)

Cheaib, B. et al. (2021) Genome erosion and evidence for an intracellular niche – exploring the biology of mycoplasmas in Atlantic salmon. Aquaculture, 541, 736772. (doi: 10.1016/j.aquaculture.2021.736772) (PMID:34471330) (PMCID:PMC8192413)

Mahalhal, A., Frau, A., Burkitt, M. D., Ijaz, U. Z. , Lamb, C. A., Mansfield, J. C., Lewis, S., Pritchard, D. M. and Probert, C. S. (2021) Oral ferric maltol does not adversely affect the intestinal microbiome of patients or mice, but ferrous sulphate does. Nutrients, 13(7), 2269. (doi: 10.3390/nu13072269) (PMID:34209042) (PMCID:PMC8308237)

Craven, H. et al. (2021) Socioeconomic position links circulatory microbiota differences with biological age. Scientific Reports, 11, 12629. (doi: 10.1038/s41598-021-92042-0) (PMID:34135381) (PMCID:PMC8209159)

Durán, C. et al. (2021) Nonlinear machine learning pattern recognition and bacteria-metabolite multilayer network analysis of perturbed gastric microbiome. Nature Communications, 12, 1926. (doi: 10.1038/s41467-021-22135-x) (PMID:33771992) (PMCID:PMC7997970)

Bach, L. L. , Ram, A., Ijaz, U. Z. , Evans, T. J. and Lindström, J. (2021) A longitudinal study of the human oropharynx microbiota over time reveals a common core and significant variations with self-reported disease. Frontiers in Microbiology, 11, 573969. (doi: 10.3389/fmicb.2020.573969) (PMID:33552004) (PMCID:PMC7861042)

Keating, C. , Bolton-Warberg, M., Hinchcliffe, J., Davies, R., Whelan, S., Wan, A.H.L., Fitzgerald, R.D., Davies, S.J., Ijaz, U.Z. and Smith, C.J. (2021) Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh the response to diet supplementation with macroalgae. Animal Microbiome, 3, 7. (doi: 10.1186/s42523-020-00065-1) (PMID:33500003) (PMCID:PMC7934267)

Kazlauskaite, R. et al. (2021) SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic Salmon GI tract and associated microbial communities. Microbiome, 9, 179. (doi: 10.1186/s40168-021-01134-6) (PMID:34465363) (PMCID:PMC8408954)

Mills, S., Trego, A. C., Lens, P. N.L., Ijaz, U. and Collins, G. (2021) A distinct, flocculent, acidogenic microbial community accompanies methanogenic granules in anaerobic digesters. Microbiology Spectrum, 9(3), e00784-21. (doi: 10.1128/Spectrum.00784-21) (PMID:34756083) (PMCID:PMC8579839)

2020

Zafeiropoulou, K. et al. (2020) Alterations in intestinal microbiota of children with celiac disease at time of diagnosis and on a gluten-free diet. Gastroenterology, 159(6), 2039-2051.e20. (doi: 10.1053/j.gastro.2020.08.007) (PMID:32791131) (PMCID:PMC7773982)

Mittell, E. A., Cobbold, C. A. , Ijaz, U. Z. , Kilbride, E. A., Moore, K. A. and Mable, B. K. (2020) Feral populations of Brassica oleracea along Atlantic coasts in western Europe. Ecology and Evolution, 10(20), pp. 11810-11825. (doi: 10.1002/ece3.6821) (PMID:33145003) (PMCID:PMC7593181)

Trego, A. C., O'Sullivan, S., Quince, C., Mills, S., Ijaz, U. Z. and Collins, G. (2020) Size shapes the active microbiome of the methanogenic granules, corroborating a biofilm life cycle. mSystems, 5(5), e00323-20. (doi: 10.1128/mSystems.00323-20) (PMID:32994285)

McKenna, A. et al. (2020) Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter. Microbiome, 8, 128. (doi: 10.1186/s40168-020-00908-8) (PMID:32907634) (PMCID:PMC7488076)

Gkikas, K. , Gerasimidis, K. , Milling, S. , Ijaz, U. Z. , Hansen, R. and Russell, R. (2020) Dietary strategies for maintenance of clinical remission in inflammatory bowel diseases: Are we there yet? Nutrients, 12(7), 2018. (doi: 10.3390/nu12072018) (PMID:32645980) (PMCID:PMC7400838)

Trego, A. C. et al. (2020) Growth and break-up of methanogenic granules suggests mechanisms for biofilm and community development. Frontiers in Microbiology, 11, 1126. (doi: 10.3389/fmicb.2020.01126) (PMID:32582085) (PMCID:PMC7285868)

Cholet, F., Ijaz, U. Z. and Smith, C. J. (2020) Reverse transcriptase enzyme and priming strategy affect quantification and diversity of environmental transcripts. Environmental Microbiology, 22(6), pp. 2383-2402. (doi: 10.1111/1462-2920.15017) (PMID:32285609)

Logan, M. et al. (2020) Analysis of 61 exclusive enteral nutrition formulas used in management of active Crohn's disease - new insights into dietary disease triggers. Alimentary Pharmacology and Therapeutics, 51(10), pp. 935-947. (doi: 10.1111/apt.15695) (PMID:32249975)

Heys, C. , Cheaib, B. , Busetti, A., Kazlauskaite, R., Maier, L., Sloan, W.T. , Ijaz, U.Z. , Kaufmann, J., McGinnity, P. and Llewellyn, M.S. (2020) Neutral processes dominate microbial community assembly in Atlantic salmon, Salmo salar. Applied and Environmental Microbiology, 86(8), e02283-19. (doi: 10.1128/AEM.02283-19) (PMID:32033945) (PMCID:PMC7117918)

Cheaib, B. , Seghouani, H., Ijaz, U. and Derome, N. (2020) Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations. Microbiome, 8, 14. (doi: 10.1186/s40168-020-0789-0) (PMID:32041654) (PMCID:PMC7011381)

Bain, K.A. et al. (2020) Alopecia areata is characterized by dysregulation in systemic type 17 and type 2 cytokines, which may contribute to disease‐associated psychological morbidity. British Journal of Dermatology, 182(1), pp. 130-137. (doi: 10.1111/bjd.18008) (PMID:30980732)

Stratakos, A. C. et al. (2020) In vitro and in vivo characterisation of Listeria monocytogenes outbreak isolates. Food Control, 107, 106784. (doi: 10.1016/j.foodcont.2019.106784)

Jukes, C., Ijaz, U. Z. , Buckley, A., Spencer, J., Irvine, J., Li, J. V., Marchesi, J. R., Candlish, D. and Douce, G. (2020) Bile salt metabolism is not the only factor contributing to Clostridioides (Clostridium) difficile disease severity in the murine model of disease. Gut Microbes, 11(3), pp. 481-496. (doi: 10.1080/19490976.2019.1678996) (PMID:31793403) (PMCID:PMC7524298)

2019

Connelly, S. , Pussayanavin, T., Randle-Boggis, R., Wicheansan, A., Jampathong, S., Keating, C. , Ijaz, U. Z. , Sloan, W. and Koottatep, T. (2019) Solar Septic Tank: next generation sequencing reveals effluent microbial community composition as a useful index of system performance. Water, 11(12), 2660. (doi: 10.3390/w11122660)

Gerasimidis, K. , Svolos, V., Nichols, B., Papadopoulou, R., Quince, C., Ijaz, U. Z. , Milling, S. , Gaya, D. R., Russell, R. K. and Hansen, R. (2019) Reply. Gastroenterology, 157(4), pp. 1161-1162. (doi: 10.1053/j.gastro.2019.08.015) (PMID:31408620)

Logan, M. et al. (2019) The reduction of faecal calprotectin during exclusive enteral nutrition is lost rapidly after food re-introduction. Alimentary Pharmacology and Therapeutics, 50(6), pp. 664-674. (doi: 10.1111/apt.15425) (PMID:31342536) (PMCID:PMC6772069)

Gauchotte-Lindsay, C. , Aspray, T. J., Knapp, M. and Ijaz, U. Z. (2019) Systems biology approach to elucidation of contaminants biodegradation in complex samples- integration of high-resolution analytical and molecular tools. Faraday Discussions, 218, pp. 481-504. (doi: 10.1039/C9FD00020H) (PMID:31140531)

Plancq, J. , Couto, J., Ijaz, U. Z. , Leavitt, P. R. and Toney, J. (2019) Next generation sequencing to identify lacustrine haptophytes in the Canadian Prairies: significance for temperature proxy applications. Journal of Geophysical Research: Biogeosciences, 124(7), pp. 2144-2158. (doi: 10.1029/2018JG004954)

Frau, A. et al. (2019) DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies. Scientific Reports, 9, 9328. (doi: 10.1038/s41598-019-44974-x) (PMID:31249384) (PMCID:PMC6597572)

Trego, A. C. et al. (2019) De novo growth of methanogenic granules indicates a biofilm life-cycle with complex ecology. bioRxiv, (doi: 10.1101/667386) (Submitted)

Ormsby, M. J. et al. (2019) Inflammation associated ethanolamine facilitates infection by Crohn's disease-linked adherent-invasive Escherichia coli. EBioMedicine, 43, pp. 325-332. (doi: 10.1016/j.ebiom.2019.03.071) (PMID:31036531) (PMCID:PMC6557746)

Svolos, V. et al. (2019) Treatment of active Crohn’s disease with an ordinary food-based diet that replicates exclusive enteral nutrition. Gastroenterology, 156(5), 1354-1367.e6. (doi: 10.1053/j.gastro.2018.12.002) (PMID:30550821)

Dingle, K. E. et al. (2019) A role for tetracycline selection in recent evolution of agriculture-associated Clostridium difficile PCR ribotype 078. mBio, 10(2), e02790-18. (doi: 10.1128/mBio.02790-18) (PMID:30862754) (PMCID:PMC6414706)

Cholet, F., Ijaz, U. Z. and Smith, C. J. (2019) Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples. Environmental Microbiology, 21(2), pp. 827-844. (doi: 10.1111/1462-2920.14516) (PMID:30585386) (PMCID:PMC6392129)

Keating, C. , Hinchcliff, J., Davies, R. , Wan, A., Davies, S., Fitzgerald, R., Ijaz, U. , Smith, C. and Bolton, M. (2019) Effects of Supplementing a Fishmeal Diet with Algae on the Hindgut Microbiome of Farmed Atlantic Cod (Gadus Morhua) [Poster]. 8th Congress of European Microbiologists, Glasgow, UK, 07-11 Jul 2019.

2018

Trego, A. C., Morabito, C., Mills, S., Connelly, S. , Bourven, I., Guibaud, G., Quince, C., Ijaz, U. Z. and Collins, G. (2018) Diversity converges during community assembly in methanogenic granules, suggesting a biofilm life-cycle. bioRxiv, (doi: 10.1101/484642) (Submitted)

Calus, S. T., Ijaz, U. Z. and Pinto, A. (2018) NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform. GigaScience, 7(12), giy140. (doi: 10.1093/gigascience/giy140) (PMID:30476081) (PMCID:PMC6298384)

Kostrytsia, A., Papirio, S., Morrison, L., Ijaz, U. Z. , Collins, G., Lens, P. N.L. and Esposito, G. (2018) Biokinetics Of microbial consortia using biogenic sulfur as a novel electron donor for sustainable denitrification. Bioresource Technology, 270, pp. 359-367. (doi: 10.1016/j.biortech.2018.09.044) (PMID:30243243)

De Vrieze, J., Ijaz, U. Z. , Saunders, A. M. and Theuerl, S. (2018) Terminal restriction fragment length polymorphism is an “old school” reliable technique for swift microbial community screening in anaerobic digestion. Scientific Reports, 8, 16818. (doi: 10.1038/s41598-018-34921-7) (PMID:30429514) (PMCID:PMC6235954)

Ijaz, U. Z. et al. (2018) Comprehensive longitudinal microbiome analysis of the chicken cecum reveals a shift from competitive to environmental drivers and a window of opportunity for Campylobacter. Frontiers in Microbiology, 9, 2452. (doi: 10.3389/fmicb.2018.02452) (PMID:30374341) (PMCID:PMC6196313)

Gerasimidis, K. , Zafeiropoulou, K., Mackinder-Jonas, M., Ijaz, U. Z. , Duncan, H., Buchanan, E., Cardigan, T., Edwards, C. A. , McGrogan, P. and Russell, R. K. (2018) Comparison of clinical methods with the faecal gluten immunogenic peptide to assess gluten intake in coeliac disease. Journal of Pediatric Gastroenterology and Nutrition, 67(3), pp. 356-360. (doi: 10.1097/MPG.0000000000002062) (PMID:29916953)

Reich, I., Ijaz, U. Z. , Gormally, M. and Smith, C. J. (2018) 16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus. Scientific Reports, 8, 10402. (doi: 10.1038/s41598-018-28720-3) (PMID:29991804) (PMCID:PMC6039444)

Keating, C. , Hughes, D., Mahony, T., Cysneiros, D., Ijaz, U.Z. , Smith, C.J. and O‘Flaherty, V. (2018) Cold adaptation and replicable microbial community development during long-term low temperature anaerobic digestion treatment of synthetic sewage. FEMS Microbiology Ecology, 94(7), fiy095. (doi: 10.1093/femsec/fiy095) (PMID:29846574) (PMCID:PMC5995215)

Pedersen, C. et al. (2018) Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans. Physiological Reports, 6(7), e13649. (doi: 10.14814/phy2.13649) (PMID:29611319) (PMCID:PMC5880877)

Pinto, A. J., de Vrieze, J., Sloan, W. T. and Ijaz, U. Z. (2018) The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool. Microbiome, 6, 63. (doi: 10.1186/s40168-018-0449-9) (PMID:29609653) (PMCID:PMC5879801)

Yuan, X. et al. (2018) Effect of laser irradiation on cell function and its implications in Raman spectroscopy. Applied and Environmental Microbiology, 84(8), e02508-17. (doi: 10.1128/AEM.02508-17) (PMID:29427427) (PMCID:PMC5881070)

Joyce, A., Ijaz, U. Z. , Nzeteu, C., Vaughan, A., Shirran, S. L., Botting, C. H., Quince, C., O'Flaherty, V. and Abram, F. (2018) Linking microbial community structure and function during the acidified anaerobic digestion of grass. Frontiers in Microbiology, 9, 540. (doi: 10.3389/fmicb.2018.00540) (PMID:29619022) (PMCID:PMC5871674)

Koci, O., Logan, M. , Svolos, V., Russell, R. K., Gerasimidis, K. and Ijaz, U. Z. (2018) An automated identification and analysis of ontological terms in gastrointestinal diseases and nutrition-related literature provides useful insights. PeerJ, 6, e5047. (doi: 10.7717/peerj.5047) (PMID:30065857) (PMCID:PMC6064635)

2017

Ho, A., Ijaz, U. Z. , Janssens, T. K.S., Ruijs, R., Kim, S. Y., de Boer, W., Termorshuizen, A., van der Putten, W. H. and Bodelier, P. L.E. (2017) Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition. GCB Bioenergy, 9(12), pp. 1707-1720. (doi: 10.1111/gcbb.12457)

Logan, M. , Ijaz, U.Z. , Hansen, R., Gerasimidis, K. and Russell, R.K. (2017) Letter: reproducible evidence shows that exclusive enteral nutrition significantly reduces faecal calprotectin concentrations in children with active Crohn's Disease. Alimentary Pharmacology and Therapeutics, 46(11-12), pp. 1119-1120. (doi: 10.1111/apt.14351) (PMID:29105140)

Parsons, B. N. et al. (2017) Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13(11), e1006653. (doi: 10.1371/journal.ppat.1006653) (PMID:29095917) (PMCID:PMC5667734)

Ritchie, N. D., Ijaz, U. Z. and Evans, T. J. (2017) IL-17 signalling restructures the nasal microbiome and drives dynamic changes following Streptococcus pneumoniae colonization. BMC Genomics, 18, 807. (doi: 10.1186/s12864-017-4215-3) (PMID:29058583) (PMCID:PMC5651609)

Ijaz, A. Z., Jeffries, T. C., Ijaz, U. Z. , Hamonts, K. and SinghIjaz, B. K. (2017) Extending Seqenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences. PeerJ, 5, e3827. (doi: 10.7717/peerj.3827) (PMID:29038749) (PMCID:PMC5639872)

Cho, S.-K., Jung, K.-W., Kim, D.-H., Kwon, J.-C., Ijaz, U. Z. and Shin, S. G. (2017) Bacterial community analysis in upflow multilayer anaerobic reactor (UMAR) treating high-solids organic wastes. Biotechnology Progress, 33(5), pp. 1226-1234. (doi: 10.1002/btpr.2540) (PMID:28840641) (PMCID:PMC6585729)

Connelly, S. , Shin, S. G., Dillon, R. J., Ijaz, U. Z. , Quince, C., Sloan, W. T. and Collins, G. (2017) Bioreactor scalability: laboratory-scale bioreactor design influences performance, ecology, and community physiology in expanded granular sludge bed bioreactors. Frontiers in Microbiology, 8, 664. (doi: 10.3389/fmicb.2017.00664) (PMID:28507535) (PMCID:PMC5410579)

De Vrieze, J., Christiaens, M. E.R., Walraedt, D., Devooght, A., Ijaz, U. Z. and Boon, N. (2017) Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure. Water Research, 111, pp. 109-117. (doi: 10.1016/j.watres.2016.12.042) (PMID:28063283)

Harris, K., Parsons, T. L., Ijaz, U. Z. , Lahti, L., Holmes, I. and Quince, C. (2017) Linking statistical and ecological theory: Hubbell's unified neutral theory of biodiversity as a hierarchical dirichlet process. Proceedings of the IEEE, 105(3), pp. 516-529. (doi: 10.1109/JPROC.2015.2428213)

Ijaz, U. Z. et al. (2017) The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically linked kindred. PLoS ONE, 12(2), e0172605. (doi: 10.1371/journal.pone.0172605) (PMID:28222161) (PMCID:PMC5319678)

Svolos, V. et al. (2017) Dietary Manipulation of the Healthy Human and Colitic Murine Gut Microbiome by CD-TREAT Diet and Exclusive Enteral Nutrition; A Proof of Concept Studyy. 12th Congress of ECCO, Barcelona, Spain, 15-18 Feb 2017. S29-S30. (doi: 10.1093/ecco-jcc/jjx002.045)

2016

Sinclair, L. et al. (2016) Seqenv: linking sequences to environments through text mining. PeerJ, 4, e2690. (doi: 10.7717/peerj.2690) (PMID:28028456) (PMCID:PMC5178346)

Pedersen, C. et al. (2016) Host–microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake. British Journal of Nutrition, 116(11), pp. 1869-1877. (doi: 10.1017/S0007114516004086) (PMID:27974055)

Pedersen, C. et al. (2016) Galacto-Oligosaccharide has no Effect on Glucose Tolerance, inflammatory Markers or Intestinal Permeability in Well-controlled Type 2 Diabetes. Nutrition Society Summer Meeting: New Technology in Nutrition Research and Practice, Dublin, Ireland, 11-14 July 2016. (doi: 10.1017/S0029665116001191)

Oulas, A. et al. (2016) Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab). Biodiversity Data Journal, 4, e8357. (doi: 10.3897/BDJ.4.e8357) (PMID:27932907) (PMCID:PMC5136650)

Ray, J. L. et al. (2016) Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Molecular Ecology, 25(21), pp. 5585-5602. (doi: 10.1111/mec.13844) (PMID:27662431)

Gerasimidis, K. , Ijaz, U. Z. , Edwards, C. , Russell, R. K., Quince, C. and Hansen, R. (2016) Response to Kaakoush et al. American Journal of Gastroenterology, 111(7), pp. 1033-1034. (doi: 10.1038/ajg.2016.169) (PMID:27356826)

Svolos, V., Hansen, R., Hughes, K., Ijaz, U.Z. , Quince, C., Gaya, D., Russell, R. and Gerasimidis, K. (2016) The Impact of ‘Crohn’s Disease-TReatment-with-EATing’ Diet (CD-TREAT Diet) and Exclusive Enteral Nutrition on Healthy Gut Bacteria Metabolism. 11th Congress of the European Crohn's and Colitis Organisation, Amsterdam, The Netherlands, 16-19 March 2016. S14-S15. (doi: 10.1093/ecco-jcc/jjw019.017)

Schirmer, M., D’Amore, R., Ijaz, U. Z. , Hall, N. and Quince, C. (2016) Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17, 125. (doi: 10.1186/s12859-016-0976-y) (PMID:26968756) (PMCID:PMC4787001)

Torondel, B. et al. (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9(2), pp. 209-223. (doi: 10.1111/1751-7915.12334) (PMID:26875588) (PMCID:PMC4767293)

D’Amore, R., Ijaz, U. Z. , Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., Shakya, M., Podar, M., Quince, C. and Hall, N. (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17, 55. (doi: 10.1186/s12864-015-2194-9) (PMID:26763898) (PMCID:PMC4712552)

Bautista-de los Santos, Q. M., Schroeder, J., Sevillano-Rivera, M. C., Sungthong, R. , Ijaz, U. Z. , Sloan, W. T. and Pinto, A. J. (2016) Emerging investigators series: Microbial communities in full-scale drinking water distribution systems – A meta-analysis. Environmental Science: Water Research and Technology, 2(4), pp. 631-644. (doi: 10.1039/C6EW00030D)

Gerasimidis, K. , Bertz, M., Quince, C., Brunner, K., Bruce, A., Combet, E. , Calus, S., Loman, N. and Ijaz, U. (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9, 365. (doi: 10.1186/s13104-016-2171-7) (PMID:27456340) (PMCID:PMC4960752)

2015

Pinto, A. J., Marcus, D. N., Ijaz, U. Z. , Bautista-de lose Santos, Q. M., Dick, G. J. and Raskin, L. (2015) Metagenomic evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System. mSphere, 1(1), e00054-15. (doi: 10.1128/mSphere.00054-15)

Quince, C. et al. (2015) Extensive modulation of the fecal metagenome in children with Crohn’s Disease during exclusive enteral nutrition. American Journal of Gastroenterology, 110, pp. 1718-1729. (doi: 10.1038/ajg.2015.357) (PMID:26526081)

Savio, D. et al. (2015) Bacterial diversity along a 2600 km river continuum. Environmental Microbiology, 17(12), pp. 4994-5007. (doi: 10.1111/1462-2920.12886) (PMID:25922985)

Castelino, M., Eyre, S., Tutino, M., Moat, J., Martin, P., Ijaz, U. , Quince, C., Ho, P., Upton, M. and Barton, A. (2015) Bacterial Skin Microbiome in Psoriatic Arthritis: Pilot Data from Psoriatic Plaques on Dry Skin Sites from Patients with Psoriasis (PsC) and Psoriatic Arthritis (PsA). ACR/ARHP Annual Meeting, San Francisco, CA, USA, 6-11 Nov 2015. pp. 1-4046. (doi: 10.1002/art.39448)

Couto, J. M., Ijaz, U. Z. , Phoenix, V. R. , Schirmer, M. and Sloan, W. T. (2015) Metagenomic sequencing unravels gene fragments with phylogenetic signatures of O2-tolerant NiFe membrane-bound hydrogenases in lacustrine sediment. Current Microbiology, 71(2), pp. 296-302. (doi: 10.1007/s00284-015-0846-2) (PMID:26044993) (PMCID:PMC4486115)

Schirmer, M., Ijaz, U. Z. , D'Amore, R., Hall, N., Sloan, W. T. and Quince, C. (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research, 43(6), e37. (doi: 10.1093/nar/gku1341) (PMID:25586220) (PMCID:PMC4381044)

Castelino, M., Eyre, S., Moat, J., Fox, G., Martin, P., Ijaz, U. , Quince, C., Ho, P., Upton, M. and Barton, A. (2015) The Skin Microbiome in Psoriatic Arthritis: Methodology Development and Pilot Data. Spring Meeting for Clinician Scientists in Training, London, UK, 26 Feb 2015. S27. (doi: 10.1016/S0140-6736(15)60342-7)

Khan, M. J. et al. (2015) A Detailed Analysis of the Gut Microbial Diversity and Metabolic Activity in Children with Obesity of Different Aetiology and Lean Controls. The Nutrition Society Summer Meeting: Carbohydrates in Health: Friends or Foes?, Glasgow, UK, 14-17 Jul 2014. (doi: 10.1017/S0029665115000907)

2014

Gerasimidis, K. , Loman, N., Quick, J., Calus, S., Ijaz, U. , McGrogan, P., Edwards, C.A. , Quince, C. and Russell, R.K. (2014) Metagenomic Analysis of the Gut Microbiome During a Course of Exclusive Enteral Nutrition (EEN) Provides Novel Insights on Mechanism of EEN Action. 3rd International Symposium on Pediatric Inflammatory Bowel Disease, Rotterdam, The Netherlands, 10-13 Sept 2014. S393-S394. (doi: 10.1016/S1873-9946(14)50003-7)

Alneberg, J., Bjarnason, B. S., de Bruijn, I., Schirmer, M., Quick, J., Ijaz, U. Z. , Lahti, L., Loman, N. J., Andersson, A. F. and Quince, C. (2014) Binning metagenomic contigs by coverage and composition. Nature Methods, 11(11), pp. 1144-1146. (doi: 10.1038/NMETH.3103) (PMID:25218180)

2013

Ijaz, U. Z. , Housden, R. J., Treece, G. M., Prager, R. W. and Gee, A. H. (2013) Multidirectional scattering models for 3-dimensional ultrasound imaging. Journal of Ultrasound in Medicine, 32(4), pp. 699-714. (doi: 10.7863/ultra.32.4.699) (PMID:23525397)

2012

Dyer, E., Ijaz, U. , Housden, R., Prager, R., Gee, A. and Treece, G. (2012) A clinical system for three-dimensional extended-field-of-view ultrasound. British Journal of Radiology, 85(1018), e919-e924. (doi: 10.1259/bjr/46007369) (PMID:22972979) (PMCID:PMC3474010)

2011

Ijaz, U.Z. , Prager, R.W., Gee, A.H. and Treece, G.M. (2011) Particle swarm optimization for in vivo 3D ultrasound volume registration. In: André, M.P., Jones, J.P. and Lee, H. (eds.) Acoustical Imaging. Series: Acoustical Imaging (30). Springer Netherlands: Dordrecht, pp. 345-354. ISBN 9789048132553 (doi: 10.1007/978-90-481-3255-3_39)

Ijaz, U.Z. , Prager, R.W., Gee, A.H. and Treece, G.M. (2011) A study of similarity measures for in vivo 3D ultrasound volume registration. In: André, M.P., Jones, J.P. and Lee, H. (eds.) Acoustical Imaging. Series: Acoustical Imaging (30). Springer: Dordrecht, pp. 315-323. ISBN 9789048132553 (doi: 10.1007/978-90-481-3255-3_36)

2010

Ijaz, U. Z. , Prager, R. W., Gee, A. H. and Treece, G. M. (2010) Optimization strategies for ultrasound volume registration. Measurement Science and Technology, 21(8), 085803. (doi: 10.1088/0957-0233/21/8/085803)

Khambampati, A. K., Ijaz, U. Z. , Lee, J. S., Kim, S. and Kim, K. Y. (2010) Phase boundary estimation in electrical impedance tomography using the Hooke and Jeeves pattern search method. Measurement Science and Technology, 21(3), 035501. (doi: 10.1088/0957-0233/21/3/035501)

Prager, R.W., Ijaz, U.Z. , Treece, G.M. and Gee, A.H. (2010) Three-dimensional ultrasound imaging. Proceedings of the Institution of Mechanical Engineers Part H: Journal of Engineering in Medicine, 224(2), pp. 193-223. (doi: 10.1243/09544119JEIM586) (PMID:20349815)

2009

Kim, J. H., Choi, B. Y., Ijaz, U. Z. , Kim, B. S., Kim, S. and Kim, K. Y. (2009) Directional algebraic reconstruction technique for electrical impedance tomography. Journal of the Korean Physical Society, 54(4), pp. 1439-1447. (doi: 10.3938/jkps.54.1439)

Khambampati, A.K., Rashid, A., Ijaz, U.Z. , Kim, S., Soleimani, M. and Kim, K.Y. (2009) Unscented Kalman filter approach to tracking a moving interfacial boundary in sedimentation processes using three-dimensional electrical impedance tomography. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 367(1900), pp. 3095-3120. (doi: 10.1098/rsta.2009.0081) (PMID:19581257)

2008

Ijaz, U. Z. , Khambampati, A. K., Lee, J. S., Kim, S. and Kim, K. Y. (2008) Nonstationary phase boundary estimation in electrical impedance tomography using unscented Kalman filter. Journal of Computational Physics, 227(15), pp. 7089-7112. (doi: 10.1016/j.jcp.2007.12.025)

Ijaz, U. Z. , Chung, S. I., Khambampati, A. K., Kim, K. Y. and Kim, S. (2008) Electrical resistance imaging of a time-varying interface in stratified flows using an unscented Kalman filter. Measurement Science and Technology, 19(6), 065501. (doi: 10.1088/0957-0233/19/6/065501)

2007

Ijaz, U. Z. , Khambampati, A. K., Kim, M.-C., Kim, S. and Kim, K.-Y. (2007) Estimation of time-dependent heat flux and measurement bias in two-dimensional inverse heat conduction problems. International Journal of Heat and Mass Transfer, 50(21-22), pp. 4117-4130. (doi: 10.1016/j.ijheatmasstransfer.2007.02.037)

Kim, Y. S., Lee, S. H., Ijaz, U. Z. , Kim, K. Y. and Choi, B. Y. (2007) Sensitivity map generation in electrical capacitance tomography using mixed normalization models. Measurement Science and Technology, 18(7), pp. 2092-2102. (doi: 10.1088/0957-0233/18/7/040)

Kim, S., Ijaz, U. Z. , Khambampati, A. K., Kim, K. Y., Kim, M. C. and Chung, S. I. (2007) Moving interfacial boundary estimation in stratified flow of two immiscible liquids using electrical resistance tomography. Measurement Science and Technology, 18(5), pp. 1257-1269. (doi: 10.1088/0957-0233/18/5/012)

Ijaz, U. Z. , Kim, J.-H., Khambampati, A. K., Kim, M.-C., Kim, S. and Kim, K.-Y. (2007) Concentration distribution estimation of fluid through electrical impedance tomography based on interacting multiple model scheme. Flow Measurement and Instrumentation, 18(1), pp. 47-56. (doi: 10.1016/j.flowmeasinst.2006.12.005)

Kim, B. S., Ijaz, U. Z. , Kim, J. H., Kim, M. C., Kim, S. and Kim, K. Y. (2007) Nonstationary phase boundary estimation in electrical impedance tomography based on the interacting multiple model scheme. Measurement Science and Technology, 18(1), pp. 62-70. (doi: 10.1088/0957-0233/18/1/008)

Ijaz, U. Z. , Chaudhary, S. U., Don, M. S. and Kim, K. Y. (2007) Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for Matlab. In: FBIT 2007: Frontiers in the Convergence of Bioscience and Information Technologies, Jeju City, Korea, 11-13 Oct 2007, pp. 129-134. ISBN 9780769529998 (doi: 10.1109/FBIT.2007.95)

Ijaz, U. Z. , Khambampati, A. K., Kim, M. C., Kim, S., Lee, J. S. and Kim, K. Y. (2007) Particle swarm optimization technique For elliptic region boundary estimation in electrical impedance tomography. In: 5th International Symposium on Measurement Techniques for Multiphase Flows (5th ISMTMF), Macau, China, 10-13 Dec 2006, pp. 896-901. ISBN 9780735404229 (doi: 10.1063/1.2747529)

Ijaz, U. Z. , Khambampati, A. K., Lee, J. S., Kim, K. Y., Kim, M. C. and Kim, S. (2007) Electrical resistance imaging of two-phase flow through rod bundles. In: 5th International Symposium on Measurement Techniques for Multiphase Flows (5th ISMTMF), Macau, China, 10-13 Dec 2006, pp. 844-849. ISBN 9780735404229 (doi: 10.1063/1.2747522)

Ijaz, U. Z. , Kim, B. S., Kao, T.-J., Khambampati, A. K., Kim, S., Kim, M. C., Newell, J. C., Isaacson, D. and Kim, K. Y. (2007) Mammography phantom studies using 3D electrical impedance tomography with numerical forward solver. In: FBIT 2007: Frontiers in the Convergence of Bioscience and Information Technologies, Jeju City, Korea, 11-13 Oct 2007, pp. 379-383. ISBN 9780769529998 (doi: 10.1109/FBIT.2007.93)

2006

Ijaz, U.Z. , Kim, J.H., Kim, M.C., Kim, S., Park, J.W. and Kim, K.Y. (2006) Nondestructive dynamic process monitoring using electrical capacitance tomography. Key Engineering Materials, 321-32, pp. 1671-1674. (doi: 10.4028/www.scientific.net/KEM.321-323.1671)

Kim, J. H., Kang, B. C., Lee, S. H., Choi, B. Y., Kim, M. C., Kim, B. S., Ijaz, U. Z. , Kim, K. Y. and Kim, S. (2006) Phase boundary estimation in electrical resistance tomography with weighted multi-layered neural networks and front point approach. Measurement Science and Technology, 17(10), pp. 2731-2739. (doi: 10.1088/0957-0233/17/10/027)

Khan, F. A., Ijaz, U. Z. , Kim, K.-Y., Kang, M.-J. and Song, W.-C. (2006) Policy-Based Management in Ad hoc Networks Using Geographic Routing. In: ICOIN 2006: Information Networking: Advances in Data Communications and Wireless Networks, Sendai, Japan, 16-19 Jan 2006, pp. 237-246. ISBN 9783540485636 (doi: 10.1007/11919568_24)

Kim, S., Ijaz, U.Z. , Khambampati, A.K., Kim, K.Y. and Kim, M.C. (2006) Effect of Current Injection Patterns on Dynamic Electrical Resistance Imaging for Fast Transient Processes. In: 5th IEEE Conference on Sensors 2006, Daegu, Korea, 22-25 Oct 2006, pp. 506-509. ISBN 1424403758 (doi: 10.1109/ICSENS.2007.355516)

This list was generated on Wed Nov 20 20:36:28 2024 GMT.

Jump to: Articles | Book Sections | Conference or Workshop Item | Conference Proceedings

Number of items: 157.

Articles

Shi, X. et al. (2024) Microbial stratification and DOM removal in drinking water biofilters: implications for enhanced performance. Water Research, 262, 122053. (doi: 10.1016/j.watres.2024.122053)

Stratakos, A. C. et al. (2020) In vitro and in vivo characterisation of Listeria monocytogenes outbreak isolates. Food Control, 107, 106784. (doi: 10.1016/j.foodcont.2019.106784)

Trego, A. C. et al. (2019) De novo growth of methanogenic granules indicates a biofilm life-cycle with complex ecology. bioRxiv, (doi: 10.1101/667386) (Submitted)

Sinclair, L. et al. (2016) Seqenv: linking sequences to environments through text mining. PeerJ, 4, e2690. (doi: 10.7717/peerj.2690) (PMID:28028456) (PMCID:PMC5178346)

Savio, D. et al. (2015) Bacterial diversity along a 2600 km river continuum. Environmental Microbiology, 17(12), pp. 4994-5007. (doi: 10.1111/1462-2920.12886) (PMID:25922985)

Book Sections

Conference or Workshop Item

Conference Proceedings

This list was generated on Wed Nov 20 20:36:28 2024 GMT.

Supervision

Shi, Linghui
Microbial communities and off-grid wastewater treatment
Subberwal, Maya
Understanding the impact of sustainable agricultural practices on crop development by focusing on microbial ecology and the exposome

Research datasets

Jump to: 2015

Number of items: 1.

2015

Schirmer, M., Ijaz, U. Z. , D'Amore, R., Hall, N., Sloan, W. and Quince, C. (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. [Data Collection]

This list was generated on Thu Nov 21 01:02:13 2024 GMT.

We use cookies

Necessary cookies

Analytics cookies

Clarity

Dr Umer Ijaz

Publications

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

2008

2007

2006

Articles

Book Sections

Conference or Workshop Item

Conference Proceedings

Supervision

Research datasets

2015