Dr Fabien Cholet
- Research Associate (Infrastructure & Environment)
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Cholet, F., Agogué, H., Ijaz, U. Z. , Lachaussée, N., Pineau, P. and Smith, C. J. (2024) Low-abundant but highly transcriptionally active uncharacterised Nitrosomonas drive ammonia-oxidation in the Brouage mudflat, France. Science of the Total Environment, 946, 174312. (doi: 10.1016/j.scitotenv.2024.174312) (PMID:38936706)
Shi, X. et al. (2024) Microbial stratification and DOM removal in drinking water biofilters: implications for enhanced performance. Water Research, 262, 122053. (doi: 10.1016/j.watres.2024.122053)
Okonkwo, V., Cholet, F., Ijaz, U. Z. , Koottatep, T., Pussayanavin, T., Polpraset, C., Sloan, W. T. , Connelly, S. and Smith, C. J. (2023) intI1 gene abundance from septic tanks in Thailand using validated intI1 primers. Applied and Environmental Microbiology, 89(11), e01071-23. (doi: 10.1128/aem.01071-23) (PMID:37874304) (PMCID:PMC10686061)
Cholet, F., Lisik, A., Agogué, H., Ijaz, U. Z. , Pineau, P., Lachaussée, N. and Smith, C. J. (2022) Ecological observations based on functional gene sequencing are sensitive to the amplicon processing method. mSphere, 7(4), e0032422. (doi: 10.1128/msphere.00324-22) (PMID:35938727) (PMCID:PMC9429940)
Tatti, E., Duff, A., Kostrysia, A., Cholet, F., Ijaz, U. and Smith, C. (2022) Potential nitrification activity reflects ammonia oxidising bacteria but not archaea activity across a soil-sediment gradient. Estuarine, Coastal and Shelf Science, 264, 107666. (doi: 10.1016/j.ecss.2021.107666)
Cholet, F., Ijaz, U. Z. and Smith, C. J. (2020) Reverse transcriptase enzyme and priming strategy affect quantification and diversity of environmental transcripts. Environmental Microbiology, 22(6), pp. 2383-2402. (doi: 10.1111/1462-2920.15017) (PMID:32285609)
Cholet, F., Ijaz, U. Z. and Smith, C. J. (2019) Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples. Environmental Microbiology, 21(2), pp. 827-844. (doi: 10.1111/1462-2920.14516) (PMID:30585386) (PMCID:PMC6392129)
Cholet, F., Agogué, H., Ijaz, U. Z. , Lachaussée, N., Pineau, P. and Smith, C. J. (2024) Low-abundant but highly transcriptionally active uncharacterised Nitrosomonas drive ammonia-oxidation in the Brouage mudflat, France. Science of the Total Environment, 946, 174312. (doi: 10.1016/j.scitotenv.2024.174312) (PMID:38936706)
Shi, X. et al. (2024) Microbial stratification and DOM removal in drinking water biofilters: implications for enhanced performance. Water Research, 262, 122053. (doi: 10.1016/j.watres.2024.122053)
Okonkwo, V., Cholet, F., Ijaz, U. Z. , Koottatep, T., Pussayanavin, T., Polpraset, C., Sloan, W. T. , Connelly, S. and Smith, C. J. (2023) intI1 gene abundance from septic tanks in Thailand using validated intI1 primers. Applied and Environmental Microbiology, 89(11), e01071-23. (doi: 10.1128/aem.01071-23) (PMID:37874304) (PMCID:PMC10686061)
Cholet, F., Lisik, A., Agogué, H., Ijaz, U. Z. , Pineau, P., Lachaussée, N. and Smith, C. J. (2022) Ecological observations based on functional gene sequencing are sensitive to the amplicon processing method. mSphere, 7(4), e0032422. (doi: 10.1128/msphere.00324-22) (PMID:35938727) (PMCID:PMC9429940)
Tatti, E., Duff, A., Kostrysia, A., Cholet, F., Ijaz, U. and Smith, C. (2022) Potential nitrification activity reflects ammonia oxidising bacteria but not archaea activity across a soil-sediment gradient. Estuarine, Coastal and Shelf Science, 264, 107666. (doi: 10.1016/j.ecss.2021.107666)
Cholet, F., Ijaz, U. Z. and Smith, C. J. (2020) Reverse transcriptase enzyme and priming strategy affect quantification and diversity of environmental transcripts. Environmental Microbiology, 22(6), pp. 2383-2402. (doi: 10.1111/1462-2920.15017) (PMID:32285609)
Cholet, F., Ijaz, U. Z. and Smith, C. J. (2019) Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples. Environmental Microbiology, 21(2), pp. 827-844. (doi: 10.1111/1462-2920.14516) (PMID:30585386) (PMCID:PMC6392129)