Dr Soichiro Tsuda
- Affiliate (School of Chemistry)
email:
Soichiro.Tsuda@glasgow.ac.uk
School of Chemisty, Joseph Black Building, University Avenue, Glasgow G12 8QQ
Publications
2020
Parrilla Gutierrez, J. M. , Sharma, A. , Tsuda, S., Cooper, G. J.T. , Aragon Camarasa, G. , Donkers, K. and Cronin, L. (2020) A programmable chemical computer with memory and pattern recognition. Nature Communications, 11, 1442. (doi: 10.1038/s41467-020-15190-3) (PMID:32188858) (PMCID:PMC7080730)
2018
Yoshida, M. , Hinkley, T., Tsuda, S., Abul-Haija, Y. , Mcburney, R. T., Kulikov, V., Mathieson, J., Galinanes Reyes, S., Castro Spencer, M. D. and Cronin, L. (2018) Using evolutionary algorithms and machine learning to explore sequence space for the discovery of antimicrobial peptides. Chem, 4(3), pp. 533-543. (doi: 10.1016/j.chempr.2018.01.005)
2017
Parrilla Gutierrez, J. M. , Tsuda, S., Grizou, J. , Taylor, J., Henson, A. and Cronin, L. (2017) Adaptive artificial evolution of droplet protocells in a 3D-printed fluidic chemorobotic platform with configurable environments. Nature Communications, 8, 1144. (doi: 10.1038/s41467-017-01161-8) (PMID:29074987) (PMCID:PMC5658334)
Yoshida, M. , Galiñanes Reyes, S. G., Tsuda, S., Horinouchi, T., Furusawa, C. and Cronin, L. (2017) Time-programmable drug dosing allows the manipulation, suppression and reversal of antibiotic drug resistance in vitro. Nature Communications, 8, 15589. (doi: 10.1038/ncomms15589) (PMID:28593940) (PMCID:PMC5472167)
2016
Hosoda, K., Tsuda, S., Kadowaki, K. and Nakamura, Y. (2016) Population–reaction model and microbial experimental ecosystems for understanding hierarchical dynamics of ecosystems. BioSystems, 140, pp. 28-34. (doi: 10.1016/j.biosystems.2015.12.005) (PMID:26747638)
2015
Tsuda, S., Jaffery, H., Doran, D., Hezwani, M., Robbins, P. J., Yoshida, M. and Cronin, L. (2015) Customizable 3D printed 'Plug and Play' millifluidic devices for programmable fluidics. PLoS ONE, 10(11), e0141640. (doi: 10.1371/journal.pone.0141640) (PMID:26558389) (PMCID:PMC4641590)
Henson, A. , Parrilla Gutierrez, J. M. , Hinkley, T., Tsuda, S. and Cronin, L. (2015) Towards heterotic computing with droplets in a fully automated droplet-maker platform. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 373(2046), 20140221. (doi: 10.1098/rsta.2014.0221) (PMID:26078348)
Tsuda, S., Sakakura, T., Fujii, S., Suzuki, H. and Yomo, T. (2015) Shape transformations of lipid vesicles by insertion of bulky-head lipids. PLoS ONE, 10(7), e0132963. (doi: 10.1371/journal.pone.0132963) (PMID:26176953) (PMCID:PMC4503622)
2014
Tsuda, S., Suzuki, H. and Yomo, T. (2014) Statistical analysis of vesicle morphology dynamics based on a free energy landscape. Soft Matter, 10(32), pp. 6038-6046. (doi: 10.1039/c4sm00992d)
Kitson, P. J., Macdonell, A., Tsuda, S., Zang, H., Long, D.-L. and Cronin, L. (2014) Bringing crystal structures to reality by three-dimensional printing. Crystal Growth and Design, 14(6), pp. 2720-2724. (doi: 10.1021/cg5003012)
Isalan, M., Shiomi, H., Tsuda, S., Suzuki, H. and Yomo, T. (2014) Liposome-based liquid handling platform featuring addition, mixing, and aliquoting of femtoliter volumes. PLoS ONE, 9(7), e101820. (doi: 10.1371/journal.pone.0101820) (PMID:24991878) (PMCID:PMC4081812)
2012
Tsuda, S., Jones, J. and Adamatzky, A. (2012) Towards Physarum engines. Applied Bionics and Biomechanics, 9(3), pp. 221-240. (doi: 10.3233/ABB-2012-0059)
Articles
Parrilla Gutierrez, J. M. , Sharma, A. , Tsuda, S., Cooper, G. J.T. , Aragon Camarasa, G. , Donkers, K. and Cronin, L. (2020) A programmable chemical computer with memory and pattern recognition. Nature Communications, 11, 1442. (doi: 10.1038/s41467-020-15190-3) (PMID:32188858) (PMCID:PMC7080730)
Yoshida, M. , Hinkley, T., Tsuda, S., Abul-Haija, Y. , Mcburney, R. T., Kulikov, V., Mathieson, J., Galinanes Reyes, S., Castro Spencer, M. D. and Cronin, L. (2018) Using evolutionary algorithms and machine learning to explore sequence space for the discovery of antimicrobial peptides. Chem, 4(3), pp. 533-543. (doi: 10.1016/j.chempr.2018.01.005)
Parrilla Gutierrez, J. M. , Tsuda, S., Grizou, J. , Taylor, J., Henson, A. and Cronin, L. (2017) Adaptive artificial evolution of droplet protocells in a 3D-printed fluidic chemorobotic platform with configurable environments. Nature Communications, 8, 1144. (doi: 10.1038/s41467-017-01161-8) (PMID:29074987) (PMCID:PMC5658334)
Yoshida, M. , Galiñanes Reyes, S. G., Tsuda, S., Horinouchi, T., Furusawa, C. and Cronin, L. (2017) Time-programmable drug dosing allows the manipulation, suppression and reversal of antibiotic drug resistance in vitro. Nature Communications, 8, 15589. (doi: 10.1038/ncomms15589) (PMID:28593940) (PMCID:PMC5472167)
Hosoda, K., Tsuda, S., Kadowaki, K. and Nakamura, Y. (2016) Population–reaction model and microbial experimental ecosystems for understanding hierarchical dynamics of ecosystems. BioSystems, 140, pp. 28-34. (doi: 10.1016/j.biosystems.2015.12.005) (PMID:26747638)
Tsuda, S., Jaffery, H., Doran, D., Hezwani, M., Robbins, P. J., Yoshida, M. and Cronin, L. (2015) Customizable 3D printed 'Plug and Play' millifluidic devices for programmable fluidics. PLoS ONE, 10(11), e0141640. (doi: 10.1371/journal.pone.0141640) (PMID:26558389) (PMCID:PMC4641590)
Henson, A. , Parrilla Gutierrez, J. M. , Hinkley, T., Tsuda, S. and Cronin, L. (2015) Towards heterotic computing with droplets in a fully automated droplet-maker platform. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 373(2046), 20140221. (doi: 10.1098/rsta.2014.0221) (PMID:26078348)
Tsuda, S., Sakakura, T., Fujii, S., Suzuki, H. and Yomo, T. (2015) Shape transformations of lipid vesicles by insertion of bulky-head lipids. PLoS ONE, 10(7), e0132963. (doi: 10.1371/journal.pone.0132963) (PMID:26176953) (PMCID:PMC4503622)
Tsuda, S., Suzuki, H. and Yomo, T. (2014) Statistical analysis of vesicle morphology dynamics based on a free energy landscape. Soft Matter, 10(32), pp. 6038-6046. (doi: 10.1039/c4sm00992d)
Kitson, P. J., Macdonell, A., Tsuda, S., Zang, H., Long, D.-L. and Cronin, L. (2014) Bringing crystal structures to reality by three-dimensional printing. Crystal Growth and Design, 14(6), pp. 2720-2724. (doi: 10.1021/cg5003012)
Isalan, M., Shiomi, H., Tsuda, S., Suzuki, H. and Yomo, T. (2014) Liposome-based liquid handling platform featuring addition, mixing, and aliquoting of femtoliter volumes. PLoS ONE, 9(7), e101820. (doi: 10.1371/journal.pone.0101820) (PMID:24991878) (PMCID:PMC4081812)
Tsuda, S., Jones, J. and Adamatzky, A. (2012) Towards Physarum engines. Applied Bionics and Biomechanics, 9(3), pp. 221-240. (doi: 10.3233/ABB-2012-0059)