Number of items: 26.
2025
    
    Sajib, Mohammad Saiful Islam, Oravcova, Katarina 
ORCID: https://orcid.org/0000-0001-5930-6803, Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299, Everest, Paul 
ORCID: https://orcid.org/0000-0001-6727-8048, Galarion, Ma Jowina H., Fuentes, Manuel 
ORCID: https://orcid.org/0000-0001-9253-316X, Wilson, Catherine, Murphy, Michael E. and Forde, Taya 
ORCID: https://orcid.org/0000-0001-9058-7826
  
(2025)
  
MultiSeq-AMR: a modular amplicon-sequencing workflow for rapid detection of bloodstream infection and antimicrobial resistance markers.
    
    Microbial Genomics, 11(4),
	 
      001383.
    
    (doi: 10.1099/mgen.0.001383)
    (PMID:40178523) 
     
  
  
2024
    Yuson, M. et al.
  
(2024)
  
Combining genomics and epidemiology to investigate a zoonotic outbreak of rabies in Romblon Province, Philippines.
    
    Nature Communications, 15,
	 
      10753.
    
    (doi: 10.1038/s41467-024-54255-5)
    (PMID:39737920) 
    (PMCID:PMC11685615) 
  
  
    Durrant, R. et al.
  
(2024)
  
Examining the molecular clock hypothesis for the contemporary evolution of the rabies virus.
    
    PLoS Pathogens, 20(11),
	 
      e1012740.
    
    (doi: 10.1371/journal.ppat.1012740)
    (PMID:39585914) 
    (PMCID:PMC11627394) 
  
  
    Jaswant, G. et al.
  
(2024)
  
Molecular characterisation of human rabies in Tanzania and Kenya: a case series report and phylogenetic investigation.
    
    Infectious Diseases of Poverty, 13,
	 
      79.
    
    (doi: 10.1186/s40249-024-01245-w)
    (PMID:39468631) 
    (PMCID:PMC11514914) 
  
  
    
    Li, Yao-Tsun, Ko, Hui-Ying, Hughes, Joseph 
ORCID: https://orcid.org/0000-0003-2556-2563, Liu, Ming-Tsuan, Lin, Yi-Ling, Hampson, Katie 
ORCID: https://orcid.org/0000-0001-5392-6884 and Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299
  
(2024)
  
From emergence to endemicity: highly pathogenic H5 avian influenza viruses in Taiwan.
    
    Nature Communications, 15(1),
	 
      9348.
    
    (doi: 10.1038/s41467-024-53816-y)
    (PMID:39472594) 
    (PMCID:PMC11522503) 
  
  
    
    Sajib, Mohammad Saiful Islam 
ORCID: https://orcid.org/0000-0002-3962-9805, Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299, Oravcova, Katarina 
ORCID: https://orcid.org/0000-0001-5930-6803, Everest, Paul 
ORCID: https://orcid.org/0000-0001-6727-8048, Murphy, Michael E. and Forde, Taya 
ORCID: https://orcid.org/0000-0001-9058-7826
  
(2024)
  
Advances in host depletion and pathogen enrichment methods for rapid sequencing-based diagnosis of bloodstream infection.
    
    Journal of Molecular Diagnostics, 26(9),
	  pp. 741-753.
     
    
    (doi: 10.1016/j.jmoldx.2024.05.008)
    (PMID:38925458) 
     
  
  
    
    Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299
  
(2024)
  
Rapid pathogen surveillance: field-ready sequencing solutions.
    
    Nature Reviews Genetics, 25(8),
	 
      532.
    
    (doi: 10.1038/s41576-024-00734-w)
    (PMID:38684856) 
     
  
  
2023
    
    Bautista, Criselda, Jaswant, Gurdeep, French, Hollie, Campbell, Kathryn, Durrant, Rowan 
ORCID: https://orcid.org/0000-0002-9742-2052, Gifford, Robert 
ORCID: https://orcid.org/0000-0003-4028-9884, Kia, Grace S.N., Ogoti, Brian, Hampson, Katie 
ORCID: https://orcid.org/0000-0001-5392-6884 and Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299
  
(2023)
  
Whole genome sequencing for rapid characterization of rabies virus using nanopore technology.
    
    Journal of Visualized Experiments(191),
	 
      e65414.
    
    (doi: 10.3791/65414)
    (PMID:37677046) 
     
  
  
    Lushasi, K. et al.
  
(2023)
  
Integrating contact tracing and whole-genome sequencing to track the elimination of dog-mediated rabies: an observational and genomic study.
    
    eLife, 12,
	 
      e85262.
    
    (doi: 10.7554/elife.85262)
    (PMID:37227428) 
    (PMCID:PMC10299823) 
  
  
2022
    
    Campbell, Kathryn, Gifford, Robert J. 
ORCID: https://orcid.org/0000-0003-4028-9884, Singer, Joshua, Hill, Verity, O'Toole, Aine, Rambaut, Andrew, Hampson, Katie 
ORCID: https://orcid.org/0000-0001-5392-6884 and Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299
  
(2022)
  
Making genomic surveillance deliver: a lineage classification and nomenclature system to inform rabies elimination.
    
    PLoS Pathogens, 18(5),
	 
      e1010023.
    
    (doi: 10.1371/journal.ppat.1010023)
    (PMID:35500026) 
    (PMCID:PMC9162366) 
  
  
    Mancy, R. et al.
  
(2022)
  
Rabies shows how scale of transmission can enable acute infections to persist at low prevalence.
    
    Science, 376(6592),
	  pp. 512-516.
     
    
    (doi: 10.1126/science.abn0713)
    (PMID:35482879) 
    (PMCID:PMC7613728) 
  
  
    Li, Y.-T. et al.
  
(2022)
  
Lineage BA.2 dominated the Omicron SARS-CoV-2 epidemic wave in the Philippines.
    
    Virus Evolution, 8(2),
	 
      veac078.
    
    (doi: 10.1093/ve/veac078)
    (PMID:36090771) 
    (PMCID:PMC9452094) 
  
  
2021
    Li, K. K. et al.
  
(2021)
  
Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units - a high risk community-hospital interface.
    
    Journal of Infection, 83(1),
	  pp. 96-103.
     
    
    (doi: 10.1016/j.jinf.2021.04.020)
    (PMID:33895226) 
    (PMCID:PMC8061788) 
  
  
    Rihn, S. J. et al.
  
(2021)
  
A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research.
    
    PLoS Biology, 19(2),
	 
      e3001091.
    
    (doi: 10.1371/journal.pbio.3001091)
    (PMID:33630831) 
    (PMCID:PMC7906417) 
  
  
    Da Silva Filipe, A. et al.
  
(2021)
  
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.
    
    Nature Microbiology, 6(1),
	  pp. 112-122.
     
    
    (doi: 10.1038/s41564-020-00838-z)
    (PMID:33349681) 
     
  
  
    Faust, C. L. et al.
  
(2021)
  
Harnessing technology and portability to conduct molecular epidemiology of endemic pathogens in resource-limited settings.
    
    Transactions of the Royal Society of Tropical Medicine and Hygiene, 115(1),
	  pp. 3-5.
     
    
    (doi: 10.1093/trstmh/traa086)
    (PMID:32945867) 
    (PMCID:PMC7788292) 
  
  
2020
    Brunker, K. et al.
  
(2020)
  
Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes.
    
    Wellcome Open Research, 5,
	 
      3.
    
    (doi: 10.12688/wellcomeopenres.15518.2)
    (PMID:32090172) 
    (PMCID:PMC7001756) 
  
  
2018
    
    Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299 and Mollentze, Nardus 
ORCID: https://orcid.org/0000-0002-2452-6416
  
(2018)
  
Rabies virus.
    
    Trends in Microbiology, 26(10),
	  pp. 886-887.
     
    
    (doi: 10.1016/j.tim.2018.07.001)
    (PMID:30072086) 
     
  
  
    
    Brunker, K. 
ORCID: https://orcid.org/0000-0001-9990-6299, Nadin-Davis, S. and Biek, R. 
ORCID: https://orcid.org/0000-0003-3471-5357
  
(2018)
  
Genomic sequencing, evolution and molecular epidemiology of rabies virus.
    
    Revue scientifique et technique (International Office of Epizootics), 37(2),
	  pp. 401-408.
     
    
    (doi: 10.20506/rst.37.2.2810)
    (PMID:30747139) 
     
  
  
    
    Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299, Lemey, Philippe, Marston, Denise A., Fooks, Anthony R., Lugelo, Ahmed, Ngeleja, Chanasa, Hampson, Katie 
ORCID: https://orcid.org/0000-0001-5392-6884 and Biek, Roman 
ORCID: https://orcid.org/0000-0003-3471-5357
  
(2018)
  
Landscape attributes governing local transmission of an endemic zoonosis: rabies virus in domestic dogs.
    
    Molecular Ecology, 27(3),
	  pp. 773-788.
     
    
    (doi: 10.1111/mec.14470)
    (PMID:29274171) 
    (PMCID:PMC5900915) 
  
  
2017
    
    Picard, Coralie, Dallot, Sylvie, Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299, Berthier, Karine, Roumagnac, Phillipe, Soubeyrand, Samuel, Jacquot, Emmanuel and Thébaud, Gaël
  
(2017)
  
Exploiting genetic information to trace plant virus dispersal in landscapes.
    
    Annual Review of Phytopathology, 55,
	  pp. 139-160.
     
    
    (doi: 10.1146/annurev-phyto-080516-035616)
    (PMID:28525307) 
     
  
  
    
    Gilbert, Lucy, Brunker, Kirstyn 
ORCID: https://orcid.org/0000-0001-9990-6299, Lande, Unni, Klingen, Ingeborg and Grøva, Lise
  
(2017)
  
Environmental risk factors for Ixodes ricinus ticks and their infestation on lambs in a changing ecosystem: Implications for tick control and the impact of woodland encroachment on tick-borne disease in livestock.
    
    Agriculture, Ecosystems and Environment, 237,
	  pp. 265-273.
     
    
    (doi: 10.1016/j.agee.2016.12.041)
     
     
  
  
2015
    Brunker, K. et al.
  
(2015)
  
Elucidating the phylodynamics of endemic rabies virus in eastern Africa using whole-genome sequencing.
    
    Virus Evolution, 1(1),
	  pp. 1-11.
     
    
    (doi: 10.1093/ve/vev011)
     
     
  
  
2012
    
    Brunker, K., Hampson, K. 
ORCID: https://orcid.org/0000-0001-5392-6884, Horton, D.L. and Biek, R. 
ORCID: https://orcid.org/0000-0003-3471-5357
  
(2012)
  
Integrating the landscape epidemiology and genetics of RNA viruses: rabies in domestic dogs as a model.
    
    Parasitology, 139(14),
	  pp. 1899-1913.
     
    
    (doi: 10.1017/S003118201200090X)
     
     
  
  
    
    Decuypere, S., Vanaerschot, M., Brunker, K., Imamura, H., Muller, S., Khanal, B., Rijal, S., Dujardin, J. and Coombs, G.H.
  
(2012)
  
Molecular mechanisms of drug resistance in natural Leishmania populations vary with genetic background.
    
    PLoS Neglected Tropical Diseases, 6(2),
	  e1514.
     
    
    (doi: 10.1371/journal.pntd.0001514)
     
     
  
  
2010
    t'Kindt, R. et al.
  
(2010)
  
Metabolomics to unveil and understand phenotypic diversity between pathogen populations.
    
    PLoS Neglected Tropical Diseases, 4(11),
	  e904.
     
    
    (doi: 10.1371/journal.pntd.0000904)
     
     
  
  
This list was generated on Mon Nov  3 17:25:03 2025 GMT.