Dr Chas Nelson
- Affiliate Researcher (School of Biodiversity, One Health & Veterinary Medicine)
email:
Chas.Nelson@glasgow.ac.uk
SBOHVM, Graham Kerr Building
https://orcid.org/0000-0002-4114-1710Publications
2021
Nelson, C. J. and Bonner, S. (2021) Neuronal graphs: a graph theory primer for microscopic, functional networks of neurons recorded by Calcium imaging. Frontiers in Neural Circuits, 15, 662882. (doi: 10.3389/fncir.2021.662882) (PMID:34177469) (PMCID:PMC8222695)
2020
Alharbi, S. S., Sazak, Ç., Nelson, C. J. , Alhasson, H. F. and Obara, B. (2020) The multiscale top-hat tensor enables specific enhancement of curvilinear structures in 2D and 3D images. Methods, 173, pp. 3-15. (doi: 10.1016/j.ymeth.2019.05.025) (PMID:31176770)
2019
Willcocks, C. G., Jackson, P. T.G., Nelson, C. , Nasrulloh, A. V. and Obara, B. (2019) Interactive GPU active contours for segmenting inhomogeneous objects. Journal of Real-Time Image Processing, 16(6), pp. 2305-2318. (doi: 10.1007/s11554-017-0740-1)
Taylor, J. M. , Nelson, C. J. , Bruton, F. A., Baghbadrani, A. K., Buckley, C., Tucker, C. S., Rossi, A. G., Mullins, J. J. and Denvir, M. A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. Nature Communications, 10, 5173. (doi: 10.1038/s41467-019-13112-6) (PMID:31729395) (PMCID:PMC6858381)
Sazak, Ç., Nelson, C. J. and Obara, B. (2019) The multiscale bowler-hat transform for blood vessel enhancement in retinal images. Pattern Recognition, 88, pp. 739-750. (doi: 10.1016/j.patcog.2018.10.011)
Nelson, C. J. , Jackson, P. T.G. and Obara, B. (2019) Combining mathematical morphology and the Hilbert transform for fully automatic nuclei detection in fluorescence microscopy. In: Burgeth, B., Kleefeld, A., Naegel, B., Passat, N. and Perret, B. (eds.) Mathematical Morphology and Its Applications to Signal and Image Processing: 14th International Symposium, ISMM 2019, Saarbrücken, Germany, July 8-10, 2019, Proceedings. Series: Lecture notes in computer science (11564). Springer: Cham, pp. 532-543. ISBN 9783030208660 (doi: 10.1007/978-3-030-20867-7_41)
2018
Sazak, Ç., Nelson, C. J. and Obara, B. (2018) The Multiscale Bowler-Hat Transform for Vessel Enhancement in 3D Biomedical Images. In: British Machine Vision Conference 2018, Newcastle upon Tyne, UK, 3-6 Sep 2018,
Nelson, C. , Buckley, C., Mullins, J. J., Denvir, M. A. and Taylor, J. (2018) Imaging the Developing Heart: Synchronized Timelapse Microscopy During Developmental Changes. In: SPIE BiOS, San Francisco, CA., 27-28 Jan 2018, (doi: 10.1117/12.2290191)
Alharbi, S. S., Sazak, Ç., Nelson, C. J. and Obara, B. (2018) Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images. In: IEEE International Conference on Bioinformatics and Biomedicine, Madrid, Spain, 3-6 Dec 2018, ISBN 9781538654880 (doi: 10.1109/BIBM.2018.8621329)
2017
Willcocks, C. G., Jackson, P. T.G., Nelson, C. and Obara, B. (2017) Extracting 3D parametric curves from 2D images of Helical objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(9), pp. 1757-1769. (doi: 10.1109/TPAMI.2016.2613866) (PMID:28114058)
2015
Jackson, P. T.G., Nelson, C. , Schiefele, J. and Obara, B. (2015) Runway Detection in High Resolution Remote Sensing Data. In: 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), Zagreb, Croatia, 07-09 Sep 2015, pp. 170-175. ISBN 9781467380324 (doi: 10.1109/ISPA.2015.7306053)
2014
Nelson, C. , Duckney, P., Hawkins, T. J., Deeks, M. J., Laissue, P. P., Hussey, P. J. and Boguslaw, O. (2014) Blobs and curves: object-based colocalisation for plant cells. Functional Plant Biology, 42(5), pp. 471-485. (doi: 10.1071/FP14047)
Nelson, C. J. , Dixon, M., Laissue, P. P. and Obara, B. (2014) Speeding Up Active Mesh Segmentation by Local Termination of Nodes. In: Medical Image Understanding and Analysis (MIUA 2014), Egham, UK, 09-11 Jul 2014, pp. 179-184. ISBN 9781901725513
Articles
Nelson, C. J. and Bonner, S. (2021) Neuronal graphs: a graph theory primer for microscopic, functional networks of neurons recorded by Calcium imaging. Frontiers in Neural Circuits, 15, 662882. (doi: 10.3389/fncir.2021.662882) (PMID:34177469) (PMCID:PMC8222695)
Alharbi, S. S., Sazak, Ç., Nelson, C. J. , Alhasson, H. F. and Obara, B. (2020) The multiscale top-hat tensor enables specific enhancement of curvilinear structures in 2D and 3D images. Methods, 173, pp. 3-15. (doi: 10.1016/j.ymeth.2019.05.025) (PMID:31176770)
Willcocks, C. G., Jackson, P. T.G., Nelson, C. , Nasrulloh, A. V. and Obara, B. (2019) Interactive GPU active contours for segmenting inhomogeneous objects. Journal of Real-Time Image Processing, 16(6), pp. 2305-2318. (doi: 10.1007/s11554-017-0740-1)
Taylor, J. M. , Nelson, C. J. , Bruton, F. A., Baghbadrani, A. K., Buckley, C., Tucker, C. S., Rossi, A. G., Mullins, J. J. and Denvir, M. A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. Nature Communications, 10, 5173. (doi: 10.1038/s41467-019-13112-6) (PMID:31729395) (PMCID:PMC6858381)
Sazak, Ç., Nelson, C. J. and Obara, B. (2019) The multiscale bowler-hat transform for blood vessel enhancement in retinal images. Pattern Recognition, 88, pp. 739-750. (doi: 10.1016/j.patcog.2018.10.011)
Willcocks, C. G., Jackson, P. T.G., Nelson, C. and Obara, B. (2017) Extracting 3D parametric curves from 2D images of Helical objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(9), pp. 1757-1769. (doi: 10.1109/TPAMI.2016.2613866) (PMID:28114058)
Nelson, C. , Duckney, P., Hawkins, T. J., Deeks, M. J., Laissue, P. P., Hussey, P. J. and Boguslaw, O. (2014) Blobs and curves: object-based colocalisation for plant cells. Functional Plant Biology, 42(5), pp. 471-485. (doi: 10.1071/FP14047)
Book Sections
Nelson, C. J. , Jackson, P. T.G. and Obara, B. (2019) Combining mathematical morphology and the Hilbert transform for fully automatic nuclei detection in fluorescence microscopy. In: Burgeth, B., Kleefeld, A., Naegel, B., Passat, N. and Perret, B. (eds.) Mathematical Morphology and Its Applications to Signal and Image Processing: 14th International Symposium, ISMM 2019, Saarbrücken, Germany, July 8-10, 2019, Proceedings. Series: Lecture notes in computer science (11564). Springer: Cham, pp. 532-543. ISBN 9783030208660 (doi: 10.1007/978-3-030-20867-7_41)
Conference Proceedings
Sazak, Ç., Nelson, C. J. and Obara, B. (2018) The Multiscale Bowler-Hat Transform for Vessel Enhancement in 3D Biomedical Images. In: British Machine Vision Conference 2018, Newcastle upon Tyne, UK, 3-6 Sep 2018,
Nelson, C. , Buckley, C., Mullins, J. J., Denvir, M. A. and Taylor, J. (2018) Imaging the Developing Heart: Synchronized Timelapse Microscopy During Developmental Changes. In: SPIE BiOS, San Francisco, CA., 27-28 Jan 2018, (doi: 10.1117/12.2290191)
Alharbi, S. S., Sazak, Ç., Nelson, C. J. and Obara, B. (2018) Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images. In: IEEE International Conference on Bioinformatics and Biomedicine, Madrid, Spain, 3-6 Dec 2018, ISBN 9781538654880 (doi: 10.1109/BIBM.2018.8621329)
Jackson, P. T.G., Nelson, C. , Schiefele, J. and Obara, B. (2015) Runway Detection in High Resolution Remote Sensing Data. In: 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), Zagreb, Croatia, 07-09 Sep 2015, pp. 170-175. ISBN 9781467380324 (doi: 10.1109/ISPA.2015.7306053)
Nelson, C. J. , Dixon, M., Laissue, P. P. and Obara, B. (2014) Speeding Up Active Mesh Segmentation by Local Termination of Nodes. In: Medical Image Understanding and Analysis (MIUA 2014), Egham, UK, 09-11 Jul 2014, pp. 179-184. ISBN 9781901725513
Research datasets
2019
Taylor, J., Nelson, C. , Bruton, F. A., Baghbadrani, A. K., Buckley, C., Tucker, C. S., Rossi, A. G., Mullins, J. J. and Denvir, M. A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. [Data Collection]