Dr Jo Halliday
- Senior Lecturer (Infectious Disease Ecology)
telephone:
01413305741
email:
Jo.Halliday@glasgow.ac.uk
Rm 313, Institute BAH&CM, Graham Kerr Building, Glasgow G12 8QQ
https://orcid.org/0000-0002-1329-9035Research interests
Research interests
I am interested in the epidemiology, surveillance and control of zoonotic pathogens. My work is focused on investigating the health, productivity and ecological impacts of endemic bacterial zoonotic diseases across different settings in northern Tanzania. Much of my current research is on brucellosis. I also work on livestock and rodent associated pathogens including Bartonella, Coxiella and Leptospira spp.
The abstract, reprint and full text of the 2017 Science paper "Driving improvements in emerging disease surveillance through locally-relevant capacity strengthening" are available via these links.
Academic history
- Lecturer in Zoonoses Epidemiology, University of Glasgow, 2017 - present
- Post-doctoral research associate, University of Glasgow, 2011-2017
- PhD, University of Edinburgh, 2010
- MRes, University of Edinburgh, 2005
- BSc Human Sciences, University College London, 2003
Research groups
Publications
2025
Mendes, Â. J.F. et al. (2025) Livestock production losses attributable to brucellosis in northern and central Tanzania: Application of an epidemiological-economic modelling framework. PLoS Neglected Tropical Diseases, 19(2), e0012814. (doi: 10.1371/journal.pntd.0012814) (PMID:39951456)
Deidda, M. et al. (2025) Economic burden of musculoskeletal disorders in Tanzania: results from a community-based survey. BMJ Open, 15(1), e087425. (doi: 10.1136/bmjopen-2024-087425) (PMID:39819935)
2024
Lankester, F. et al. (2024) Livestock abortion surveillance in Tanzania reveals disease priorities and importance of timely collection of vaginal swab samples for attribution. eLife, 13, RP95296. (doi: 10.7554/eLife.95296.3) (PMID:39679912) (PMCID:PMC11649233)
Bowhay, T. R. et al. (2024) Risk factors for spotted fever group rickettsioses in Kilimanjaro Region, Tanzania. Open Forum Infectious Diseases, 11(12), ofae664. (doi: 10.1093/ofid/ofae664)
Masłowska, K. et al. (2024) Evaluation of C. burnetii Detection by qPCR in Different Sample Types Collected From Scottish Dairy Cattle. Hannah Dairy Research Foundation (HDRF) Conference 2024: Next Generation Data-Led Dairying, Edinburgh, UK, 18-19 Nov 2024.
Madut, D. B. et al. (2024) Epidemiologic and genomic characterization of an outbreak of Rift Valley fever among humans and dairy cattle in northern Tanzania. Journal of Infectious Diseases, (doi: 10.1093/infdis/jiae562) (PMID:39535803) (Accepted for Publication)
Moorthy, G. S. et al. (2024) Prevalence and risk factors for Q fever, spotted fever group rickettsioses, and typhus group rickettsioses in a pastoralist community of northern Tanzania, 2016–2017. Tropical Medicine and International Health, 29(5), pp. 365-376. (doi: 10.1111/tmi.13980) (PMID:38480005)
Mbwamboa, G. A. et al. (2024) Complete genome sequence of Brucella abortus isolated from a human blood culture sample in Tanzania. Microbiology Resource Announcements, 13(2), e00930-23. (doi: 10.1128/mra.00930-23) (PMID:38289053) (PMCID:PMC10871059)
Laurie, E. , Siebert, S. , Yongolo, N., Halliday, J. , Biswaro, S., Krauth, S. J. , Kilonzo, K., Mmbaga, B. T., McIntosh, E. and NIHR Global Health Group, . (2024) Evidencing the clinical and economic burden of musculoskeletal disorders in Tanzania: Paving the way for urgent rheumatology service development. Rheumatology Advances in Practice, 8(1), rkad110. (doi: 10.1093/rap/rkad110) (PMID:38143512) (PMCID:PMC10748784)
Yongolo, N. M. et al. (2024) Estimating the prevalence and predictors of musculoskeletal disorders in Tanzania: a cross-sectional pilot study. Pan African Medical Journal, 47, 36. (doi: 10.11604/pamj.2024.47.36.38258)
2023
Maze, M. J. et al. (2023) Prevalence and risk factors for human leptospirosis at a hospital serving a pastoralist community, Endulen, Tanzania. PLoS Neglected Tropical Diseases, 17(12), e0011855. (doi: 10.1371/journal.pntd.0011855) (PMID:38117858) (PMCID:PMC10766184)
Aparicio-Chagolla, A., Vazquez, R. , Allan, K. , Carter, R., Halliday, J. , Viora, L. and Mason, C. (2023) Assessment of Coxiella burnetii Within a Scottish Dairy Cattle Herd: Investigations Prompted by Stillbirth Event Reporting. 6th European Meeting of Animal Chlamydioses & Zoonoses and 1st European Meeting of Intracellular Abortifacient Pathogens Conference (EMAC-6), Edinburgh, UK, 28-29 Nov 2023.
Weller, G. , McKay, C. , Vazquez, R. , Carter, R., Pagnossin, D., Allan, K. , Viora, L. and Halliday, J. (2023) Investigation of Coxiella burnetii Following Parturition: A Fresh Spotlight on a Neglected Disease in Scotland. 6th European Meeting of Animal Chlamydioses & Zoonoses and 1st European Meeting of Intracellular Abortifacient Pathogens Conference (EMAC-6), Edinburgh, UK, 28-29 Nov 2023.
Weller, G. , McKay, C. , Vazquez, R. , Pagnossin, D., Carter, R., Viora, L. , Allan, K. and Halliday, J. (2023) Cross Sectional Investigation of Coxiella burnetii Following Parturition: A New Spotlight on a Neglected Zoonotic Disease in Scotland. Hannah Dairy Research Foundation (HDRF) Conference 2023: Next Generation Quality Dairying, Edinburgh, UK, 20-21 Nov 2023.
Wheelhouse, N., Vazquez, R. , Viora, L. and Halliday, J. E.B. (2023) Q fever and coxiellosis: implications for livestock and human health in the UK. Livestock, 28(5), pp. 221-226. (doi: 10.12968/live.2023.28.5.221)
Weller, G. , Vazquez, R. , Allan, K. , Viora, L. and Halliday, J. (2023) Investigating the Prevalence and Impact of Coxiella burnetii Infection in Dairy Herds in Scotland. European Buiatrics Congress and ECBHM Jubilee Symposium 2023, Berlin, Germany, 24-26 Aug 2023.
Moshi, B. et al. (2023) Trends of frequency, mortality and risk factors among patients admitted with stroke from 2017 to 2019 to the medical ward at Kilimanjaro Christian Medical Centre hospital: a retrospective observational study. BMJ Open, 13(7), e071918. (doi: 10.1136/bmjopen-2023-071918) (PMID:37524544) (PMCID:PMC10391824)
Deidda, M. et al. (2023) Estimating the Economic Impact of Musculoskeletal Disorders in Tanzania: Results from a Community-Based Survey. Diversity in Health Economics, 15th International Health Economics Association World Congress, Cape Town, South Africa, 08-12 Jul 2023.
Grieve, E. et al. (2023) Estimating the Quality-of-Life Impact of Musculoskeletal Disorders in Tanzania: Results from a Cross-Sectional Community-Based Survey. Diversity in Health Economics, 15th International Health Economics Association World Congress, Cape Town, South Africa, 08-12 Jul 2023.
Gad Kilonzo, K. et al. (2023) Estimating the prevalence, quality of life, economic and societal impact of arthritis in Tanzania: protocol for a mixed methods study. [Protocols]
Gad Kilonzo, K. et al. (2023) Analysis of qualitative data, Statistical Analysis and Health Economic Analysis. [Protocols]
Gad Kilonzo, K. et al. (2023) Data storage and security. [Protocols]
Gad Kilonzo, K. et al. (2023) Laboratory and radiological data collection. [Protocols]
Kilonzo, K. G. et al. (2023) Estimating the prevalence, quality of life, economic and societal impact of arthritis in Tanzania: protocol for a mixed methods study. [Protocols]
Kilonzo, K. G. et al. (2023) Qualitative methods. [Protocols]
2022
De Glanville, W. A. et al. (2022) An outbreak of Rift Valley fever among peri-urban dairy cattle in northern Tanzania. Transactions of the Royal Society of Tropical Medicine and Hygiene, 116(11), pp. 1082-1090. (doi: 10.1093/trstmh/trac076) (PMID:36040309) (PMCID:PMC9623736)
de Glanville, W. A. et al. (2022) Inter-epidemic Rift Valley fever virus infection incidence and risks for zoonotic spillover in northern Tanzania. PLoS Neglected Tropical Diseases, 16(10), e0010871. (doi: 10.1371/journal.pntd.0010871) (PMID:36306281) (PMCID:PMC9665400)
Thomas, K. M. et al. (2022) Prospective cohort study reveals unexpected aetiologies of livestock abortion in Northern Tanzania. Scientific Reports, 12, 11669. (doi: 10.1038/s41598-022-15517-8) (PMID:35803982) (PMCID:PMC9270399)
Dennis, T. P.W., Mable, B. K. , Brunelle, B., Devault, A., Carter, R. W., Ling, C. L., Mmbaga, B. T., Halliday, J. E.B. , Oravcova, K. and Forde, T. L. (2022) Target-enrichment sequencing yields valuable genomic data for challenging-to-culture bacteria of public health importance. Microbial Genomics, 8(5), 000836. (doi: 10.1099/mgen.0.000836) (PMID:35622897) (PMCID:PMC9465068)
Lukambagire, A. S., Shirima, G. M., Shayo, D. D., Mathew, C., Yapi, R. B., Kasanga, C. J., Mmbaga, B. T., Kazwala, R. R. and Halliday, J. E.B. (2022) Brucellosis testing patterns at health facilities in Arusha region, northern Tanzania. PLoS ONE, 17(3), e0265612. (doi: 10.1371/journal.pone.0265612) (PMID:35320293) (PMCID:PMC8942238)
Pisharody, S. et al. (2022) Incidence estimates of acute Q fever and spotted fever group rickettsioses, Kilimanjaro, Tanzania, from 2007 to 2008 and from 2012 to 2014. American Journal of Tropical Medicine and Hygiene, 106(2), pp. 494-503. (doi: 10.4269/ajtmh.20-1036) (PMID:34929672) (PMCID:PMC8832940)
2021
Davis, A. et al. (2021) "He who relies on his brother’s property dies poor": the complex narratives of livestock care in northern Tanzania. Frontiers in Veterinary Science, 8, 749561. (doi: 10.3389/fvets.2021.749561) (PMID:34805339) (PMCID:PMC8595325)
Bodenham, R. F. et al. (2021) Latent class evaluation of the performance of serological tests for exposure to Brucella spp. in cattle, sheep, and goats in Tanzania. PLoS Neglected Tropical Diseases, 15(8), e0009630. (doi: 10.1371/journal.pntd.0009630) (PMID:34428205) (PMCID:PMC8384210)
Theonest, N. O. et al. (2021) Molecular detection of Coxiella burnetii infection in small mammals from Moshi Rural and Urban Districts, northern Tanzania. Veterinary Medicine and Science, 7(3), pp. 960-967. (doi: 10.1002/vms3.401) (PMID:33277971) (PMCID:PMC8136964)
Akoko, J. M. et al. (2021) Molecular epidemiology of Brucella species in mixed livestock-human ecosystems in Kenya. Scientific Reports, 11, 8881. (doi: 10.1038/s41598-021-88327-z) (PMID:33893352) (PMCID:PMC8065124)
Lukambagire, A. S. et al. (2021) Performance characteristics and costs of serological tests for brucellosis in a pastoralist community of northern Tanzania. Scientific Reports, 11, 5480. (doi: 10.1038/s41598-021-82906-w) (PMID:33750848) (PMCID:PMC7943594)
2020
de Glanville, W. A. et al. (2020) Classification and characterisation of livestock production systems in northern Tanzania. PLoS ONE, 15(12), e0229478. (doi: 10.1371/journal.pone.0229478) (PMID:33378382) (PMCID:PMC7773236)
Mendes, Â. , Haydon, D. T. , McIntosh, E. , Hanley, N. and Halliday, J. E.B. (2020) Socially vs. privately optimal control of livestock diseases: a case for integration of epidemiology and economics. Frontiers in Veterinary Science, 7, 558409. (doi: 10.3389/fvets.2020.558409) (PMID:33324694) (PMCID:PMC7723844)
Allan, K. J. et al. (2020) Molecular detection and typing of pathogenic Leptospira in febrile patients and phylogenetic comparison with Leptospira detected among animals in Tanzania. American Journal of Tropical Medicine and Hygiene, 103(4), pp. 1427-1434. (doi: 10.4269/ajtmh.19-0703) (PMID:32748767) (PMCID:PMC7543812)
Akoko, J. et al. (2020) Serological and molecular evidence of Brucella species in the rapidly growing pig sector in Kenya. BMC Veterinary Research, 16(1), 133. (doi: 10.1186/s12917-020-02346-y) (PMID:32393374) (PMCID:PMC7216537)
Bodenham, R. F. et al. (2020) Prevalence and speciation of brucellosis in febrile patients from a pastoralist community of Tanzania. Scientific Reports, 10, 7081. (doi: 10.1038/s41598-020-62849-4) (PMID:32341414) (PMCID:PMC7184621)
Halliday, J. E.B. et al. (2020) Zoonotic causes of febrile illness in malaria endemic countries: a systematic review. Lancet Infectious Diseases, 20(2), e27-e37. (doi: 10.1016/S1473-3099(19)30629-2) (PMID:32006517) (PMCID:PMC7212085)
2019
Theonest, N. O. et al. (2019) Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania. PLoS ONE, 14(10), e0223667. (doi: 10.1371/journal.pone.0223667) (PMID:31613914) (PMCID:PMC6793857)
Behdenna, A. et al. (2019) Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182772. (doi: 10.1098/rspb.2018.2772) (PMID:30914008) (PMCID:PMC6452066)
2018
Paul, E., Kiwelu, I., Mmbaga, B., Nazareth, R., Sabuni, E., Maro, A., Ndaro, A., Halliday, J. E.B. and Chilongola, J. (2018) Toxoplasma gondii seroprevalence among pregnant women attending antenatal clinic in Northern Tanzania. Tropical Medicine and Health, 46(1), 39. (doi: 10.1186/s41182-018-0122-9) (PMID:30479556) (PMCID:PMC6245905)
Allan, K. J. et al. (2018) Assessment of animal hosts of pathogenic Leptospira in northern Tanzania. PLoS Neglected Tropical Diseases, 12(6), e0006444. (doi: 10.1371/journal.pntd.0006444) (PMID:29879104) (PMCID:PMC5991636)
Maze, M. J. et al. (2018) Risk factors for human acute leptospirosis in northern Tanzania. PLoS Neglected Tropical Diseases, 12(6), e0006372. (doi: 10.1371/journal.pntd.0006372) (PMID:29879114) (PMCID:PMC5991637)
Carugati, M. et al. (2018) Incidence of human brucellosis in the Kilimanjaro Region of Tanzania in the periods 2007-2008 and 2012-2014. Transactions of the Royal Society of Tropical Medicine and Hygiene, 112(3), pp. 136-143. (doi: 10.1093/trstmh/try033) (PMID:29697848) (PMCID:PMC5961162)
Cash-Goldwasser, S. et al. (2018) Risk factors for human brucellosis in northern Tanzania. American Journal of Tropical Medicine and Hygiene, 98(2), pp. 598-606. (doi: 10.4269/ajtmh.17-0125) (PMID:29231152) (PMCID:PMC5929176)
2017
Halliday, J. E.B. , Hampson, K. , Hanley, N. , Lembo, T. , Sharp, J. P. , Haydon, D. T. and Cleaveland, S. (2017) Driving improvements in emerging disease surveillance through locally-relevant capacity strengthening. Science, 357(6347), pp. 146-148. (doi: 10.1126/science.aam8332) (PMID:28706036)
Cleaveland, S. et al. (2017) One Health contributions towards more effective and equitable approaches to health in low- and middle-income countries. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1725), 20160168. (doi: 10.1098/rstb.2016.0168) (PMID:28584176) (PMCID:PMC5468693)
Ladbury, G. et al. (2017) One health research in Northern Tanzania – challenges and progress. East African Health Research Journal, 1(1), pp. 8-18. (doi: 10.24248/EAHRJ-D-16-00379)
2016
Maze, M. J. et al. (2016) Comparison of the estimated incidence of acute leptospirosis in the Kilimanjaro Region of Tanzania between 2007-08 and 2012-14. PLoS Neglected Tropical Diseases, 10(12), e0005165. (doi: 10.1371/journal.pntd.0005165) (PMID:27911902) (PMCID:PMC5135036)
Viana, M. , Shirima, G. M., John, K. S., Fitzpatrick, J., Kazwala, R. R., Buza, J. J., Cleaveland, S. , Haydon, D. T. and Halliday, J. (2016) Integrating serological and genetic data to quantify cross-species transmission: brucellosis as a case study. Parasitology, 143(7), pp. 821-834. (doi: 10.1017/S0031182016000044) (PMID:26935267) (PMCID:PMC4873909)
Mtema, Z. et al. (2016) Mobile phones as surveillance tools: implementing and evaluating a large-scale intersectoral surveillance system for rabies in Tanzania. PLoS Medicine, 13(4), e1002002. (doi: 10.1371/journal.pmed.1002002) (PMID:27070315) (PMCID:PMC4829224)
Zhang, H. L., Mnzava, K. W., Mitchell, S. T., Melubo, M. L., Kibona, T. J., Cleaveland, S. , Kazwala, R. R., Crump, J. A., Sharp, J. P. and Halliday, J. E.B. (2016) Mixed methods survey of zoonotic disease awareness and practice among animal and human healthcare providers in Moshi, Tanzania. PLoS Neglected Tropical Diseases, 10(3), e0004476. (doi: 10.1371/journal.pntd.0004476) (PMID:26943334) (PMCID:PMC4778930)
2015
Halliday, J. , Hampson, K. and Lembo, T. (2015) Invisible and ignored: lifting the lid on the problems of endemic zoonosez. Microbiology Today, 42(4), pp. 146-149.
Halliday, J. E.B. , Knobel, D. L. , Agwanda, B. F., Bai, Y., Breiman, R. F., Cleaveland, S. , Njenga, M.K. and Kosoy, M. (2015) Prevalence and diversity of small mammal-associated Bartonella species in rural and urban Kenya. PLoS Neglected Tropical Diseases, 9(3), e0003608. (doi: 10.1371/journal.pntd.0003608) (PMID:25781015) (PMCID:PMC4362764)
Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi: 10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)
Halliday, J. E. B. , Allan, K. J. , Ekwem, D., Cleaveland, S. , Kazwala, R. R. and Crump, J. A. (2015) Endemic zoonoses in the tropics: a public health problem hiding in plain sight. Veterinary Record, 176(9), pp. 220-225. (doi: 10.1136/vr.h798) (PMID:25722334) (PMCID:PMC4350138)
Allan, K. J. , Biggs, H. M., Halliday, J. E.B. , Kazwala, R. R., Maro, V. P., Cleaveland, S. and Crump, J. A. (2015) Epidemiology of Leptospirosis in Africa: a systematic review of a neglected zoonosis and a paradigm for 'one health' in Africa. PLoS Neglected Tropical Diseases, 9(9), e0003899. (doi: 10.1371/journal.pntd.0003899) (PMID:26368568) (PMCID:PMC4569256)
Allan, K. J. , Halliday, J. E.B. and Cleaveland, S. (2015) Renewing the momentum for leptospirosis research in Africa. Transactions of the Royal Society of Tropical Medicine and Hygiene, 109, pp. 605-606. (doi: 10.1093/trstmh/trv072) (PMID:26385934) (PMCID:PMC4574209)
2014
Vanderburg, S., Rubach, M. P., Halliday, J. E.B. , Cleaveland, S. , Reddy, E. A. and Crump, J. A. (2014) Epidemiology of Coxiella burnetii infection in Africa: a OneHealth systematic review. PLoS Neglected Tropical Diseases, 8(4), e2787. (doi: 10.1371/journal.pntd.0002787) (PMID:24722554) (PMCID:PMC3983093)
2013
Halliday, J.E.B. et al. (2013) Urban leptospirosis in Africa: a cross-sectional survey of Leptospira infection in rodents in the Kibera Urban Settlement, Nairobi, Kenya. American Journal of Tropical Medicine and Hygiene, 89(6), pp. 1095-1102. (doi: 10.4269/ajtmh.13-0415) (PMID:24080637) (PMCID:PMC3854886)
Rubach, M.P., Halliday, J.E.B. , Cleaveland, S. and Crump, J.A. (2013) Brucellosis in low-income and middle-income countries. Current Opinion in Infectious Diseases, 26(5), pp. 404-412. (doi: 10.1097/QCO.0b013e3283638104) (PMID:23963260) (PMCID:PMC3888775)
de Balogh, K., Halliday, J. and Lubroth, J. (2013) Integrating the surveillance of animal health, foodborne pathogens and foodborne diseases in developing and in-transition countries. Revue scientifique et technique (International Office of Epizootics), 32(2), pp. 539-548. (doi: 10.20506/rst.32.2.2241) (PMID:24547657)
Halliday, J. (2013) Zoonoses in a changing world. Lancet Infectious Diseases, 13(2), p. 122. (doi: 10.1016/S1473-3099(13)70022-7)
Knobel, D.L. et al. (2013) Coxiella burnetii in humans, domestic ruminants, and ticks in rural Western Kenya. American Journal of Tropical Medicine and Hygiene, 88(3), pp. 513-518. (doi: 10.4269/ajtmh.12-0169)
2012
Halliday, J. , Daborn, C., Auty, H. , Mtema, Z., Lembo, T. , Bronsvoort, B. M. d., Handel, I., Knobel, D. , Hampson, K. and Cleaveland, S. (2012) Bringing together emerging and endemic zoonoses surveillance: shared challenges and a common solution. Philosophical Transactions of the Royal Society B: Biological Sciences, 367(1604), pp. 2872-2880. (doi: 10.1098/rstb.2011.0362)
Lembo, T. , Halliday, J. , Hampson, K. , Meslin, F.-X. and Cleaveland, S. (2012) Neglected zoonoses: why should we care and what should we do? European Journal of Companion Animal Practice, 22(2), 13 -22.
Maina, A. N. et al. (2012) Rickettsia felis infection in febrile patients, Western Kenya, 2007–2010. Emerging Infectious Diseases, 18(2), pp. 328-331. (doi: 10.3201/eid1802.111372)
2011
Lembo, T. et al. (2011) Serologic surveillance of anthrax in the Serengeti Ecosystem, Tanzania, 1996–2009. Emerging Infectious Diseases, 17(3), pp. 387-394. (doi: 10.3201/eid1703.101290)
Halliday, J. et al. (2011) Surveillance and Monitoring of Zoonoses: Report for the Department for International Development. [Research Reports or Papers]
Hampson, K. et al. (2011) Predictability of anthrax infection in the Serengeti, Tanzania. Journal of Applied Ecology, 48(6), pp. 1333-1344. (doi: 10.1111/j.1365-2664.2011.02030.x)
2010
Clarke, P.M.R., Halliday, J. , Barrett, L. and Henzi, S.P. (2010) Chacma baboon mating markets: competitor suppression mediates the potential for intersexual exchange. Behavioral Ecology, 21(6), pp. 1211-1220. (doi: 10.1093/beheco/arq125)
2007
Halliday, J.E.B. , Meredith, A.L., Knobel, D.L. , Shaw, D.J., de C Bronsvoort, B.M. and Cleaveland, S. (2007) A framework for evaluating animals as sentinels for infectious disease surveillance. Journal of the Royal Society: Interface, 4(16), pp. 973-984. (doi: 10.1098/rsif.2007.0237)
Chase-Topping, M.E. et al. (2007) Risk factors for the presence of high-level shedders of Escherichia coli O157 on Scottish farms. Journal of Clinical Microbiology, 45, pp. 1594-1603. (doi: 10.1128/JCM.01690-06)
2006
Barrett, L., Halliday, J. and Henzi, S.P. (2006) The ecology of motherhood: the structuring of lactation costs by chacma baboons. Journal of Animal Ecology, 75(4), pp. 875-886. (doi: 10.1111/j.1365-2656.2006.01105.x)
Halliday, J.E.B. , Chase-Topping, M.E., Pearce, M.C., McKendrick, I.J., Allison, L., Fenlon, D., Low, C., Mellor, D.J. , Gunn, G.J. and Woolhouse, M.E.J. (2006) Herd-level risk factors associated with the presence of Phage type 21/28 E. coli O157 on Scottish cattle farms. BMC Microbiology, 6(99), (doi: 10.1186/1471-2180-6-99)
Articles
Mendes, Â. J.F. et al. (2025) Livestock production losses attributable to brucellosis in northern and central Tanzania: Application of an epidemiological-economic modelling framework. PLoS Neglected Tropical Diseases, 19(2), e0012814. (doi: 10.1371/journal.pntd.0012814) (PMID:39951456)
Deidda, M. et al. (2025) Economic burden of musculoskeletal disorders in Tanzania: results from a community-based survey. BMJ Open, 15(1), e087425. (doi: 10.1136/bmjopen-2024-087425) (PMID:39819935)
Lankester, F. et al. (2024) Livestock abortion surveillance in Tanzania reveals disease priorities and importance of timely collection of vaginal swab samples for attribution. eLife, 13, RP95296. (doi: 10.7554/eLife.95296.3) (PMID:39679912) (PMCID:PMC11649233)
Bowhay, T. R. et al. (2024) Risk factors for spotted fever group rickettsioses in Kilimanjaro Region, Tanzania. Open Forum Infectious Diseases, 11(12), ofae664. (doi: 10.1093/ofid/ofae664)
Madut, D. B. et al. (2024) Epidemiologic and genomic characterization of an outbreak of Rift Valley fever among humans and dairy cattle in northern Tanzania. Journal of Infectious Diseases, (doi: 10.1093/infdis/jiae562) (PMID:39535803) (Accepted for Publication)
Moorthy, G. S. et al. (2024) Prevalence and risk factors for Q fever, spotted fever group rickettsioses, and typhus group rickettsioses in a pastoralist community of northern Tanzania, 2016–2017. Tropical Medicine and International Health, 29(5), pp. 365-376. (doi: 10.1111/tmi.13980) (PMID:38480005)
Mbwamboa, G. A. et al. (2024) Complete genome sequence of Brucella abortus isolated from a human blood culture sample in Tanzania. Microbiology Resource Announcements, 13(2), e00930-23. (doi: 10.1128/mra.00930-23) (PMID:38289053) (PMCID:PMC10871059)
Laurie, E. , Siebert, S. , Yongolo, N., Halliday, J. , Biswaro, S., Krauth, S. J. , Kilonzo, K., Mmbaga, B. T., McIntosh, E. and NIHR Global Health Group, . (2024) Evidencing the clinical and economic burden of musculoskeletal disorders in Tanzania: Paving the way for urgent rheumatology service development. Rheumatology Advances in Practice, 8(1), rkad110. (doi: 10.1093/rap/rkad110) (PMID:38143512) (PMCID:PMC10748784)
Yongolo, N. M. et al. (2024) Estimating the prevalence and predictors of musculoskeletal disorders in Tanzania: a cross-sectional pilot study. Pan African Medical Journal, 47, 36. (doi: 10.11604/pamj.2024.47.36.38258)
Maze, M. J. et al. (2023) Prevalence and risk factors for human leptospirosis at a hospital serving a pastoralist community, Endulen, Tanzania. PLoS Neglected Tropical Diseases, 17(12), e0011855. (doi: 10.1371/journal.pntd.0011855) (PMID:38117858) (PMCID:PMC10766184)
Wheelhouse, N., Vazquez, R. , Viora, L. and Halliday, J. E.B. (2023) Q fever and coxiellosis: implications for livestock and human health in the UK. Livestock, 28(5), pp. 221-226. (doi: 10.12968/live.2023.28.5.221)
Moshi, B. et al. (2023) Trends of frequency, mortality and risk factors among patients admitted with stroke from 2017 to 2019 to the medical ward at Kilimanjaro Christian Medical Centre hospital: a retrospective observational study. BMJ Open, 13(7), e071918. (doi: 10.1136/bmjopen-2023-071918) (PMID:37524544) (PMCID:PMC10391824)
De Glanville, W. A. et al. (2022) An outbreak of Rift Valley fever among peri-urban dairy cattle in northern Tanzania. Transactions of the Royal Society of Tropical Medicine and Hygiene, 116(11), pp. 1082-1090. (doi: 10.1093/trstmh/trac076) (PMID:36040309) (PMCID:PMC9623736)
de Glanville, W. A. et al. (2022) Inter-epidemic Rift Valley fever virus infection incidence and risks for zoonotic spillover in northern Tanzania. PLoS Neglected Tropical Diseases, 16(10), e0010871. (doi: 10.1371/journal.pntd.0010871) (PMID:36306281) (PMCID:PMC9665400)
Thomas, K. M. et al. (2022) Prospective cohort study reveals unexpected aetiologies of livestock abortion in Northern Tanzania. Scientific Reports, 12, 11669. (doi: 10.1038/s41598-022-15517-8) (PMID:35803982) (PMCID:PMC9270399)
Dennis, T. P.W., Mable, B. K. , Brunelle, B., Devault, A., Carter, R. W., Ling, C. L., Mmbaga, B. T., Halliday, J. E.B. , Oravcova, K. and Forde, T. L. (2022) Target-enrichment sequencing yields valuable genomic data for challenging-to-culture bacteria of public health importance. Microbial Genomics, 8(5), 000836. (doi: 10.1099/mgen.0.000836) (PMID:35622897) (PMCID:PMC9465068)
Lukambagire, A. S., Shirima, G. M., Shayo, D. D., Mathew, C., Yapi, R. B., Kasanga, C. J., Mmbaga, B. T., Kazwala, R. R. and Halliday, J. E.B. (2022) Brucellosis testing patterns at health facilities in Arusha region, northern Tanzania. PLoS ONE, 17(3), e0265612. (doi: 10.1371/journal.pone.0265612) (PMID:35320293) (PMCID:PMC8942238)
Pisharody, S. et al. (2022) Incidence estimates of acute Q fever and spotted fever group rickettsioses, Kilimanjaro, Tanzania, from 2007 to 2008 and from 2012 to 2014. American Journal of Tropical Medicine and Hygiene, 106(2), pp. 494-503. (doi: 10.4269/ajtmh.20-1036) (PMID:34929672) (PMCID:PMC8832940)
Davis, A. et al. (2021) "He who relies on his brother’s property dies poor": the complex narratives of livestock care in northern Tanzania. Frontiers in Veterinary Science, 8, 749561. (doi: 10.3389/fvets.2021.749561) (PMID:34805339) (PMCID:PMC8595325)
Bodenham, R. F. et al. (2021) Latent class evaluation of the performance of serological tests for exposure to Brucella spp. in cattle, sheep, and goats in Tanzania. PLoS Neglected Tropical Diseases, 15(8), e0009630. (doi: 10.1371/journal.pntd.0009630) (PMID:34428205) (PMCID:PMC8384210)
Theonest, N. O. et al. (2021) Molecular detection of Coxiella burnetii infection in small mammals from Moshi Rural and Urban Districts, northern Tanzania. Veterinary Medicine and Science, 7(3), pp. 960-967. (doi: 10.1002/vms3.401) (PMID:33277971) (PMCID:PMC8136964)
Akoko, J. M. et al. (2021) Molecular epidemiology of Brucella species in mixed livestock-human ecosystems in Kenya. Scientific Reports, 11, 8881. (doi: 10.1038/s41598-021-88327-z) (PMID:33893352) (PMCID:PMC8065124)
Lukambagire, A. S. et al. (2021) Performance characteristics and costs of serological tests for brucellosis in a pastoralist community of northern Tanzania. Scientific Reports, 11, 5480. (doi: 10.1038/s41598-021-82906-w) (PMID:33750848) (PMCID:PMC7943594)
de Glanville, W. A. et al. (2020) Classification and characterisation of livestock production systems in northern Tanzania. PLoS ONE, 15(12), e0229478. (doi: 10.1371/journal.pone.0229478) (PMID:33378382) (PMCID:PMC7773236)
Mendes, Â. , Haydon, D. T. , McIntosh, E. , Hanley, N. and Halliday, J. E.B. (2020) Socially vs. privately optimal control of livestock diseases: a case for integration of epidemiology and economics. Frontiers in Veterinary Science, 7, 558409. (doi: 10.3389/fvets.2020.558409) (PMID:33324694) (PMCID:PMC7723844)
Allan, K. J. et al. (2020) Molecular detection and typing of pathogenic Leptospira in febrile patients and phylogenetic comparison with Leptospira detected among animals in Tanzania. American Journal of Tropical Medicine and Hygiene, 103(4), pp. 1427-1434. (doi: 10.4269/ajtmh.19-0703) (PMID:32748767) (PMCID:PMC7543812)
Akoko, J. et al. (2020) Serological and molecular evidence of Brucella species in the rapidly growing pig sector in Kenya. BMC Veterinary Research, 16(1), 133. (doi: 10.1186/s12917-020-02346-y) (PMID:32393374) (PMCID:PMC7216537)
Bodenham, R. F. et al. (2020) Prevalence and speciation of brucellosis in febrile patients from a pastoralist community of Tanzania. Scientific Reports, 10, 7081. (doi: 10.1038/s41598-020-62849-4) (PMID:32341414) (PMCID:PMC7184621)
Halliday, J. E.B. et al. (2020) Zoonotic causes of febrile illness in malaria endemic countries: a systematic review. Lancet Infectious Diseases, 20(2), e27-e37. (doi: 10.1016/S1473-3099(19)30629-2) (PMID:32006517) (PMCID:PMC7212085)
Theonest, N. O. et al. (2019) Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania. PLoS ONE, 14(10), e0223667. (doi: 10.1371/journal.pone.0223667) (PMID:31613914) (PMCID:PMC6793857)
Behdenna, A. et al. (2019) Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182772. (doi: 10.1098/rspb.2018.2772) (PMID:30914008) (PMCID:PMC6452066)
Paul, E., Kiwelu, I., Mmbaga, B., Nazareth, R., Sabuni, E., Maro, A., Ndaro, A., Halliday, J. E.B. and Chilongola, J. (2018) Toxoplasma gondii seroprevalence among pregnant women attending antenatal clinic in Northern Tanzania. Tropical Medicine and Health, 46(1), 39. (doi: 10.1186/s41182-018-0122-9) (PMID:30479556) (PMCID:PMC6245905)
Allan, K. J. et al. (2018) Assessment of animal hosts of pathogenic Leptospira in northern Tanzania. PLoS Neglected Tropical Diseases, 12(6), e0006444. (doi: 10.1371/journal.pntd.0006444) (PMID:29879104) (PMCID:PMC5991636)
Maze, M. J. et al. (2018) Risk factors for human acute leptospirosis in northern Tanzania. PLoS Neglected Tropical Diseases, 12(6), e0006372. (doi: 10.1371/journal.pntd.0006372) (PMID:29879114) (PMCID:PMC5991637)
Carugati, M. et al. (2018) Incidence of human brucellosis in the Kilimanjaro Region of Tanzania in the periods 2007-2008 and 2012-2014. Transactions of the Royal Society of Tropical Medicine and Hygiene, 112(3), pp. 136-143. (doi: 10.1093/trstmh/try033) (PMID:29697848) (PMCID:PMC5961162)
Cash-Goldwasser, S. et al. (2018) Risk factors for human brucellosis in northern Tanzania. American Journal of Tropical Medicine and Hygiene, 98(2), pp. 598-606. (doi: 10.4269/ajtmh.17-0125) (PMID:29231152) (PMCID:PMC5929176)
Halliday, J. E.B. , Hampson, K. , Hanley, N. , Lembo, T. , Sharp, J. P. , Haydon, D. T. and Cleaveland, S. (2017) Driving improvements in emerging disease surveillance through locally-relevant capacity strengthening. Science, 357(6347), pp. 146-148. (doi: 10.1126/science.aam8332) (PMID:28706036)
Cleaveland, S. et al. (2017) One Health contributions towards more effective and equitable approaches to health in low- and middle-income countries. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1725), 20160168. (doi: 10.1098/rstb.2016.0168) (PMID:28584176) (PMCID:PMC5468693)
Ladbury, G. et al. (2017) One health research in Northern Tanzania – challenges and progress. East African Health Research Journal, 1(1), pp. 8-18. (doi: 10.24248/EAHRJ-D-16-00379)
Maze, M. J. et al. (2016) Comparison of the estimated incidence of acute leptospirosis in the Kilimanjaro Region of Tanzania between 2007-08 and 2012-14. PLoS Neglected Tropical Diseases, 10(12), e0005165. (doi: 10.1371/journal.pntd.0005165) (PMID:27911902) (PMCID:PMC5135036)
Viana, M. , Shirima, G. M., John, K. S., Fitzpatrick, J., Kazwala, R. R., Buza, J. J., Cleaveland, S. , Haydon, D. T. and Halliday, J. (2016) Integrating serological and genetic data to quantify cross-species transmission: brucellosis as a case study. Parasitology, 143(7), pp. 821-834. (doi: 10.1017/S0031182016000044) (PMID:26935267) (PMCID:PMC4873909)
Mtema, Z. et al. (2016) Mobile phones as surveillance tools: implementing and evaluating a large-scale intersectoral surveillance system for rabies in Tanzania. PLoS Medicine, 13(4), e1002002. (doi: 10.1371/journal.pmed.1002002) (PMID:27070315) (PMCID:PMC4829224)
Zhang, H. L., Mnzava, K. W., Mitchell, S. T., Melubo, M. L., Kibona, T. J., Cleaveland, S. , Kazwala, R. R., Crump, J. A., Sharp, J. P. and Halliday, J. E.B. (2016) Mixed methods survey of zoonotic disease awareness and practice among animal and human healthcare providers in Moshi, Tanzania. PLoS Neglected Tropical Diseases, 10(3), e0004476. (doi: 10.1371/journal.pntd.0004476) (PMID:26943334) (PMCID:PMC4778930)
Halliday, J. , Hampson, K. and Lembo, T. (2015) Invisible and ignored: lifting the lid on the problems of endemic zoonosez. Microbiology Today, 42(4), pp. 146-149.
Halliday, J. E.B. , Knobel, D. L. , Agwanda, B. F., Bai, Y., Breiman, R. F., Cleaveland, S. , Njenga, M.K. and Kosoy, M. (2015) Prevalence and diversity of small mammal-associated Bartonella species in rural and urban Kenya. PLoS Neglected Tropical Diseases, 9(3), e0003608. (doi: 10.1371/journal.pntd.0003608) (PMID:25781015) (PMCID:PMC4362764)
Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi: 10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)
Halliday, J. E. B. , Allan, K. J. , Ekwem, D., Cleaveland, S. , Kazwala, R. R. and Crump, J. A. (2015) Endemic zoonoses in the tropics: a public health problem hiding in plain sight. Veterinary Record, 176(9), pp. 220-225. (doi: 10.1136/vr.h798) (PMID:25722334) (PMCID:PMC4350138)
Allan, K. J. , Biggs, H. M., Halliday, J. E.B. , Kazwala, R. R., Maro, V. P., Cleaveland, S. and Crump, J. A. (2015) Epidemiology of Leptospirosis in Africa: a systematic review of a neglected zoonosis and a paradigm for 'one health' in Africa. PLoS Neglected Tropical Diseases, 9(9), e0003899. (doi: 10.1371/journal.pntd.0003899) (PMID:26368568) (PMCID:PMC4569256)
Allan, K. J. , Halliday, J. E.B. and Cleaveland, S. (2015) Renewing the momentum for leptospirosis research in Africa. Transactions of the Royal Society of Tropical Medicine and Hygiene, 109, pp. 605-606. (doi: 10.1093/trstmh/trv072) (PMID:26385934) (PMCID:PMC4574209)
Vanderburg, S., Rubach, M. P., Halliday, J. E.B. , Cleaveland, S. , Reddy, E. A. and Crump, J. A. (2014) Epidemiology of Coxiella burnetii infection in Africa: a OneHealth systematic review. PLoS Neglected Tropical Diseases, 8(4), e2787. (doi: 10.1371/journal.pntd.0002787) (PMID:24722554) (PMCID:PMC3983093)
Halliday, J.E.B. et al. (2013) Urban leptospirosis in Africa: a cross-sectional survey of Leptospira infection in rodents in the Kibera Urban Settlement, Nairobi, Kenya. American Journal of Tropical Medicine and Hygiene, 89(6), pp. 1095-1102. (doi: 10.4269/ajtmh.13-0415) (PMID:24080637) (PMCID:PMC3854886)
Rubach, M.P., Halliday, J.E.B. , Cleaveland, S. and Crump, J.A. (2013) Brucellosis in low-income and middle-income countries. Current Opinion in Infectious Diseases, 26(5), pp. 404-412. (doi: 10.1097/QCO.0b013e3283638104) (PMID:23963260) (PMCID:PMC3888775)
de Balogh, K., Halliday, J. and Lubroth, J. (2013) Integrating the surveillance of animal health, foodborne pathogens and foodborne diseases in developing and in-transition countries. Revue scientifique et technique (International Office of Epizootics), 32(2), pp. 539-548. (doi: 10.20506/rst.32.2.2241) (PMID:24547657)
Halliday, J. (2013) Zoonoses in a changing world. Lancet Infectious Diseases, 13(2), p. 122. (doi: 10.1016/S1473-3099(13)70022-7)
Knobel, D.L. et al. (2013) Coxiella burnetii in humans, domestic ruminants, and ticks in rural Western Kenya. American Journal of Tropical Medicine and Hygiene, 88(3), pp. 513-518. (doi: 10.4269/ajtmh.12-0169)
Halliday, J. , Daborn, C., Auty, H. , Mtema, Z., Lembo, T. , Bronsvoort, B. M. d., Handel, I., Knobel, D. , Hampson, K. and Cleaveland, S. (2012) Bringing together emerging and endemic zoonoses surveillance: shared challenges and a common solution. Philosophical Transactions of the Royal Society B: Biological Sciences, 367(1604), pp. 2872-2880. (doi: 10.1098/rstb.2011.0362)
Lembo, T. , Halliday, J. , Hampson, K. , Meslin, F.-X. and Cleaveland, S. (2012) Neglected zoonoses: why should we care and what should we do? European Journal of Companion Animal Practice, 22(2), 13 -22.
Maina, A. N. et al. (2012) Rickettsia felis infection in febrile patients, Western Kenya, 2007–2010. Emerging Infectious Diseases, 18(2), pp. 328-331. (doi: 10.3201/eid1802.111372)
Lembo, T. et al. (2011) Serologic surveillance of anthrax in the Serengeti Ecosystem, Tanzania, 1996–2009. Emerging Infectious Diseases, 17(3), pp. 387-394. (doi: 10.3201/eid1703.101290)
Hampson, K. et al. (2011) Predictability of anthrax infection in the Serengeti, Tanzania. Journal of Applied Ecology, 48(6), pp. 1333-1344. (doi: 10.1111/j.1365-2664.2011.02030.x)
Clarke, P.M.R., Halliday, J. , Barrett, L. and Henzi, S.P. (2010) Chacma baboon mating markets: competitor suppression mediates the potential for intersexual exchange. Behavioral Ecology, 21(6), pp. 1211-1220. (doi: 10.1093/beheco/arq125)
Halliday, J.E.B. , Meredith, A.L., Knobel, D.L. , Shaw, D.J., de C Bronsvoort, B.M. and Cleaveland, S. (2007) A framework for evaluating animals as sentinels for infectious disease surveillance. Journal of the Royal Society: Interface, 4(16), pp. 973-984. (doi: 10.1098/rsif.2007.0237)
Chase-Topping, M.E. et al. (2007) Risk factors for the presence of high-level shedders of Escherichia coli O157 on Scottish farms. Journal of Clinical Microbiology, 45, pp. 1594-1603. (doi: 10.1128/JCM.01690-06)
Barrett, L., Halliday, J. and Henzi, S.P. (2006) The ecology of motherhood: the structuring of lactation costs by chacma baboons. Journal of Animal Ecology, 75(4), pp. 875-886. (doi: 10.1111/j.1365-2656.2006.01105.x)
Halliday, J.E.B. , Chase-Topping, M.E., Pearce, M.C., McKendrick, I.J., Allison, L., Fenlon, D., Low, C., Mellor, D.J. , Gunn, G.J. and Woolhouse, M.E.J. (2006) Herd-level risk factors associated with the presence of Phage type 21/28 E. coli O157 on Scottish cattle farms. BMC Microbiology, 6(99), (doi: 10.1186/1471-2180-6-99)
Research Reports or Papers
Halliday, J. et al. (2011) Surveillance and Monitoring of Zoonoses: Report for the Department for International Development. [Research Reports or Papers]
Conference or Workshop Item
Masłowska, K. et al. (2024) Evaluation of C. burnetii Detection by qPCR in Different Sample Types Collected From Scottish Dairy Cattle. Hannah Dairy Research Foundation (HDRF) Conference 2024: Next Generation Data-Led Dairying, Edinburgh, UK, 18-19 Nov 2024.
Aparicio-Chagolla, A., Vazquez, R. , Allan, K. , Carter, R., Halliday, J. , Viora, L. and Mason, C. (2023) Assessment of Coxiella burnetii Within a Scottish Dairy Cattle Herd: Investigations Prompted by Stillbirth Event Reporting. 6th European Meeting of Animal Chlamydioses & Zoonoses and 1st European Meeting of Intracellular Abortifacient Pathogens Conference (EMAC-6), Edinburgh, UK, 28-29 Nov 2023.
Weller, G. , McKay, C. , Vazquez, R. , Carter, R., Pagnossin, D., Allan, K. , Viora, L. and Halliday, J. (2023) Investigation of Coxiella burnetii Following Parturition: A Fresh Spotlight on a Neglected Disease in Scotland. 6th European Meeting of Animal Chlamydioses & Zoonoses and 1st European Meeting of Intracellular Abortifacient Pathogens Conference (EMAC-6), Edinburgh, UK, 28-29 Nov 2023.
Weller, G. , McKay, C. , Vazquez, R. , Pagnossin, D., Carter, R., Viora, L. , Allan, K. and Halliday, J. (2023) Cross Sectional Investigation of Coxiella burnetii Following Parturition: A New Spotlight on a Neglected Zoonotic Disease in Scotland. Hannah Dairy Research Foundation (HDRF) Conference 2023: Next Generation Quality Dairying, Edinburgh, UK, 20-21 Nov 2023.
Weller, G. , Vazquez, R. , Allan, K. , Viora, L. and Halliday, J. (2023) Investigating the Prevalence and Impact of Coxiella burnetii Infection in Dairy Herds in Scotland. European Buiatrics Congress and ECBHM Jubilee Symposium 2023, Berlin, Germany, 24-26 Aug 2023.
Deidda, M. et al. (2023) Estimating the Economic Impact of Musculoskeletal Disorders in Tanzania: Results from a Community-Based Survey. Diversity in Health Economics, 15th International Health Economics Association World Congress, Cape Town, South Africa, 08-12 Jul 2023.
Grieve, E. et al. (2023) Estimating the Quality-of-Life Impact of Musculoskeletal Disorders in Tanzania: Results from a Cross-Sectional Community-Based Survey. Diversity in Health Economics, 15th International Health Economics Association World Congress, Cape Town, South Africa, 08-12 Jul 2023.
Protocols
Gad Kilonzo, K. et al. (2023) Estimating the prevalence, quality of life, economic and societal impact of arthritis in Tanzania: protocol for a mixed methods study. [Protocols]
Gad Kilonzo, K. et al. (2023) Analysis of qualitative data, Statistical Analysis and Health Economic Analysis. [Protocols]
Gad Kilonzo, K. et al. (2023) Data storage and security. [Protocols]
Gad Kilonzo, K. et al. (2023) Laboratory and radiological data collection. [Protocols]
Kilonzo, K. G. et al. (2023) Estimating the prevalence, quality of life, economic and societal impact of arthritis in Tanzania: protocol for a mixed methods study. [Protocols]
Kilonzo, K. G. et al. (2023) Qualitative methods. [Protocols]
Grants
Grants and Awards listed are those received whilst working with the University of Glasgow.
- Human brucellosis diagnosis in Tanzania: Moving from policy to practice
Medical Research Council
2024 - 2025
- Human brucellosis policy in Tanzania: Evidence based update of clinical guidance
Medical Research Council
2022 - 2023
- Human brucellosis policy in Tanzania: Evidence based update of clinical guidance
Engineering and Physical Sciences Research Council
2022 - 2023
- Prevalence and impact of Coxiella in cattle in Scotland.
Hannah Dairy Research Foundation
2022 - 2024
- Operationalising One Health Interventions in Tanzania (OOHTZ)
Biotechnology and Biological Sciences Research Council
2019 - 2021
- Brucellosis in Kenya - Modelling Transmission & Interventions Across Systems
Biotechnology and Biological Sciences Research Council
2018 - 2019
- NIHR Global Health Research Group on estimating the prevalence, quality and life, economic and societal impact of arthritis in Tanzania: a mixed methods study at University of Glasgow
National Institute for Health Research
2018 - 2021
- BBSRC GCRF Fund Impact Accelerator Extension - Boyd Orr
Biotechnology and Biological Sciences Research Council
2017 - 2018
- BBSRC IAAF - Boyd Orr Tanzania Research Accelerator
Biotechnology and Biological Sciences Research Council
2016 - 2017
- Molecular epidemology of brucellosis in northern Tanzania
Biotechnology and Biological Sciences Research Council
2014 - 2018
- A One-Health approach to dissecting the diverse zoonotic causes of non-malaria febrile illness
The Royal Society
2014 - 2018
- The Urine Microbiome of Livestock and Wildlife as Source of Zoonotic Bacteria in Tanzania (ISSF)
Wellcome Trust
2013 - 2014
Supervision
- Arinaitwe, Moses
Impact of combined mass drug administration and enhanced sanitation infrastructure and use on the burden of schistosomiasis in Uganda. - French, Hollie
Genomic surveillance and biogeography of vampire bat rabies in Central America and Mexico - Maslowska, Katarzyna
Exploration of risk posed by ruminant associated Coxiella burnetii to GB livestock and human health
Research datasets
2024
Bowhay, T. R., Rubach, M. P., Mendes, A. J., Nicholson, W. L., Perniciaro, J. L., Maze, M. J., Moorthy, G. S., Halliday, J. , Allan, K. , Mmbaga, B. T., Saganda, W., Lwezaula, B. F., Kazwala, R. R., Cleaveland, S. , Sharples, K. J., Maro, V. P. and Crump, J. A. (2024) Risk factors for spotted fever group rickettsioses in Kilimanjaro Region, Tanzania. [Data Collection]
Maro, A., Lukambagire, A. S., Mmbaga, B. T., Jie, L., Nkumbaye, S. I., Amani, N., Njau, J., Kavishe, R., Gratz, J., Houpt, E. and Halliday, J. E.B. (2024) Detection of pathogens associated with acute febrile illness in children under five years of age in rural Tanzania. [Data Collection]
Moorthy, G. S., Rubach, M. P., Maze, M. J., Refuerzo, R. P., Shirima, G. M., Lukambagire, A. S., Bodenham, R. F., Cash-Goldwasser, S. , Thomas, K. M., Sakasaka, P., Mkenda, T. R., Perniciaro, J. L., Nicholson, W. L., Kersh, G. J., Kazwala, R. R., Mmbaga, B. T., Buza, J. J., Maro, V. P., Haydon, D. T. , Crump, J. A. and Halliday, J. E.B. (2024) Prevalence and risk factors for Q fever, spotted fever group rickettsioses, and typhus group rickettsioses in a pastoralist community of northern Tanzania, 2016-2017. [Data Collection]
2023
Mbwambo, G., van Zwetselaar, M., Sonda, T., Lukambagire, A. H., Njau, J., Wadugu, B., Ignass, I., Amani, N., Hugho, E., Rubach, M., Sakasaka, P., Oisso, R., Mkenda, N., Shirima, G., Ashford, R., Haydon, D. , Maro, V., Kazwala, R., Kumburu, H. and Halliday, J. (2023) Complete genome sequence of Brucella abortus isolated from a human blood culture sample in Tanzania. [Data Collection]
Maze, M. J., Shirima, G. M., Lukambagire, A. H. S., Bodenham, R., Rubach, M. P., Cash-Goldwasser, S., Carugati, M., Thomas, K. T., Sakasaka, P., Mkenda, N., Kazwala, R. R., Mmbaga, B. T., Buza, J. J., Maro, V. P., Galloway, R. L., Haydon, D. , Crump, J. A. and Halliday, J. (2023) Prevalence and risk factors for human leptospirosis in a pastoralist community, Endulen, Tanzania. [Data Collection]
2022
Yongolo, N., Halliday, J. , Bunn, C. , Mtesha, B., Kelly, C., Krauth, S. , Mwingwa, A., Biswaro, S., Siebert, S. , Kipengele, A., Walker, R., McIntosh, E. and MMBAGA, B. T. (2022) Estimating prevalence and predictors of musculoskeletal disorders in Tanzania – A pilot study. [Data Collection]
Dennis, T., Mable, B. , Brunelle, B., Devault, A., Carter, R., Ling, C., MMBAGA, B. T., Halliday, J. , Oravcova, K. and Forde, T. (2022) Target-enrichment sequencing yields valuable genomic data for difficult-to-culture bacteria of public health importance. [Data Collection]
De Glanville, W., Nyarobi, J. M., Kibona, T., Halliday, J. , Thomas, K. M., Allan, K. , Johnson, P. , Davis, A. , Lankester, F., Claxton, J. , Rostal, M. K., Carter, R., de Jong, R. M.F., Rubach, M. P., Crump, J. A., Mmbaga, B. T., Nyasebwa, O. M., Swai, E. S., Willett, B. and Cleaveland, S. (2022) Inter-epidemic Rift Valley fever virus infection in livestock and risks for zoonotic spillover in northern Tanzania. [Data Collection]
2021
Bodenham, R., Mazeri, S., Cleaveland, S. , Crump, J., Fasina, F., De Glanville, W., Haydon, D. , Kazwala, R., Kibona, T., Maro, V., Maze, M., Mmbaga, B., Mtui-Malamsha, N., Shirima, G., Swai, E., Thomas, K., de Bronsvoort, B. and Halliday, J. (2021) Latent class evaluation of the performance of serological tests for exposure to Brucella spp. in cattle, sheep, and goats in Tanzania. [Data Collection]
Lukambagire, A., Mendes, A., Bodenham, R., McGiven, J. A., Mkenda, N. A., Mathew, C., Rubach, M. P., Sakasaka, P., Shayo, D. D., Maro, V. P., Shirima, G. M., Thomas, K., Kassanga, C. J., Kazwala, R. R., Halliday, J. and Mmbaga, B. (2021) Performance characteristics and cost of serological tests for brucellosis in a pastoralist community of northern Tanzania. [Data Collection] (Unpublished)
2020
Theonest, N. O., Carter, R., Kasagama, E., Keyyu, J. D., Shirima, G. M., Tarimo, R., Thomas, K. M., Wheelhouse, N., Maro, V. P., Haydon, D. , Buza, J. J., Allan, K. and Halliday, J. (2020) Molecular detection of Coxiella burnetii infection in small mammals from Moshi Rural and Urban Districts, northern Tanzania. [Data Collection]
De Glanville, W., Davis, A. , Allan, K. , Buza, J., Claxton, J. , Crump, J. A., Halliday, J. , Johnson, P. , Kibona, T. J., Mmbaga, B. T., Swai, E. S., Uzzell, C., Yoder, J., Sharp, J. and Cleaveland, S. (2020) Classification and characterisation of livestock production systems in northern Tanzania. [Data Collection]
Mendes, Â., Haydon, D. , McIntosh, E. , Hanley, N. and Halliday, J. (2020) An integrated epidemiological-economic model of livestock disease to inform control policy. [Data Collection]
Bodenham, R., Lukambagire, A., Ashford, R., Buza, J., Cash-Goldwasser, S., Crump, J., Kazwala, R., Maro, V., McGiven, J., Mkenda, N., Mmbaga, B., Rubach, M., Sakasaka, P., Shrirma, G., Swai, E., Thomas, K., Whatmore, A., Haydon, D. and Halliday, J. (2020) Prevalence and speciation of brucellosis in febrile patients from a pastoralist community of Tanzania. [Data Collection]
2019
Halliday, J. , Carugati, M., Snavely, M. E., Allan, K. , Beamesderfer, J., Ladbury, G. A. F., Hoyle, D. V., Holland, P., Crump, J. A., Cleaveland, S. and Rubach, M. P. (2019) Zoonotic causes of febrile illness in malaria endemic countries: a systematic review. [Data Collection]
Allan, K. , Maze, M. J., Galloway, R. L., Rubach, M. P., Biggs, M. M., Halliday, J. , Cleaveland, S. , Saganda, W., Lwezaula, B. F., Kazwala, R. R., Mmbaga, B. T., Maro, V. P. and Crump, J. A. (2019) Molecular detection and typing of pathogenic Leptospira in febrile patients and phylogenetic comparison with Leptospira detected among animals in Tanzania. [Data Collection]
Theonest, N. O., Carter, R., Amani, N., Doherty, S., Hugho, E., Keyyu, J. D., Mable, B. , Shirima, G. M., Tarimo, R., Thomas, K. M., Haydon, D. , Buza, J. J., Allan, K. and Halliday, J. (2019) Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania. [Data Collection]
2016
Zhang, H., Mnzava, K., Mitchell, S., Melubo, M., Kibona, T., Cleaveland, S. , Kazwala, R. R., Crump, J. A., Sharp, J. and Halliday, J. (2016) Mixed methods survey of zoonotic disease awareness and practice among animal and human healthcare providers in Moshi, Tanzania. [Data Collection] (Unpublished)
2015
Allan, K. , Biggs, H. M., Halliday, J. , Kazwala, R. R., Maro, V. P., Cleaveland, S. and Crump, J. A. (2015) Epidemiology of Leptospirosis in Africa: a systematic review of a neglected zoonosis and a paradigm for 'One Health' in Africa. [Data Collection]
Halliday, J. , Knobel, D. L., Agwanda, B., Bai, Y., Breiman, R. F., Cleaveland, S. , Njenga, M. K. and Kosoy, M. (2015) Prevalence and diversity of small mammal-associated Bartonella species in rural and urban Kenya. [Data Collection]
