2025

Bradfer-Lawrence, T. et al. (2025) Spillovers and legacies of land management on temperate woodland biodiversity. Nature Ecology and Evolution, (doi: 10.1038/s41559-025-02688-6) (PMID:40269116) (Early Online Publication)

Matthiopoulos, J. , Thompson, K. R., Watt, L., O'Brien, S. H. and Furness, R. W. (2025) Reconstructing and forecasting the dynamics of an internationally important population of Manx shearwaters. Endangered Species Research, (doi: 10.3354/esr01399) (Accepted for Publication)

Niven, H. , Jeglinski, J. W. E. , Aarts, G., Wakefield, E. D. and Matthiopoulos, J. (2025) Towards biologically realistic estimates of home range and spatial exposure for colonial animals. Methods in Ecology and Evolution, (Accepted for Publication)

2024

Blackwell, P. G. and Matthiopoulos, J. (2024) Joint inference for telemetry and spatial survey data. Ecology, 105(12), e4457. (doi: 10.1002/ecy.4457) (PMID:39475100) (PMCID:PMC11610709)

Jeglinski, J. W.E. , Niven, H. I. , Wanless, S., Barrett, R. T., Harris, M. P., Dierschke, J. and Matthiopoulos, J. (2024) Past and future effects of climate on the metapopulation dynamics of a Northeast Atlantic seabird across two centuries. Ecology Letters, 27(12), e14479. (doi: 10.1111/ele.14479) (PMID:39739319) (PMCID:PMC11686948)

Nelli, L. et al. (2024) Freedom from infection: enhancing decision-making for malaria elimination. BMJ Global Health, 9(12), e014412. (doi: 10.1136/bmjgh-2023-014412)

Chadwick, F. J., Haydon, D. T. , Husmeier, D. , Ovaskainen, O. and Matthiopoulos, J. (2024) LIES of omission: complex observation processes in ecology. Trends in Ecology and Evolution, 39(4), pp. 368-380. (doi: 10.1016/j.tree.2023.10.009) (PMID:37949794)

Jeglinski, J. W.E. , Lane, J. V., Votier, S. C., Furness, R. W., Hamer, K. C., McCafferty, D. J. , Nager, R. G. , Sheddan, M., Wanless, S. and Matthiopoulos, J. (2024) HPAIV outbreak triggers short-term colony connectivity in a seabird metapopulation. Scientific Reports, 14, 3126. (doi: 10.1038/s41598-024-53550-x) (PMID:38326368) (PMCID:PMC10850054)

Jarrett, C., Cyril, K., Haydon, D. T. , Wandji, C. A., Ferreira, D. F., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2024) Fewer pests and more ecosystem service‐providing arthropods in shady African cocoa farms: insights from a data integration study. Journal of Applied Ecology, 61(2), pp. 304-315. (doi: 10.1111/1365-2664.14563)

2023

Ribeiro, R. , Matthiopoulos, J. , Lindgren, F., Tello, C., Zariquiey, C. M., Valderrama, W., Rocke, T. E. and Streicker, D. G. (2023) Incorporating environmental heterogeneity and observation effort to predict host distribution and viral spillover from a bat reservoir. Proceedings of the Royal Society B: Biological Sciences, 290(2011), 20231739. (doi: 10.1098/rspb.2023.1739) (PMID:37989240) (PMCID:PMC10688441)

Grémillet, D. et al. (2023) Strong breeding colony fidelity in northern gannets following high pathogenicity avian influenza virus (HPAIV) outbreak. Biological Conservation, 286, 110269. (doi: 10.1016/j.biocon.2023.110269)

Johnson, E. et al. (2023) Landscape drives zoonotic malaria prevalence in non-human primates. eLife, (doi: 10.7554/eLife.88616) (Early Online Publication)

Jeglinski, J. W.E. , Wanless, S., Murray, S., Barrett, R. T., Gardarsson, A., Harris, M. P., Dierschke, J., Strøm, H., Lorentsen, S.-H. and Matthiopoulos, J. (2023) Metapopulation regulation acts at multiple spatial scales: insights from a century of seabird colony census data. Ecological Monographs, 93(2), e1569. (doi: 10.1002/ecm.1569)

Viana, M. et al. (2023) Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science Advances, 9(10), eadd7437. (doi: 10.1126/sciadv.add7437) (PMID:36897949) (PMCID:PMC10005164)

2022

Aldossari, S., Husmeier, D. and Matthiopoulos, J. (2022) Transferable species distribution modelling: comparative performance of Generalised Functional Response models. Ecological Informatics, 71, 101803. (doi: 10.1016/j.ecoinf.2022.101803)

Matthiopoulos, J. (2022) Defining, estimating, and understanding the fundamental niches of complex animals in heterogeneous environments. Ecological Monographs, 92(4), e1545. (doi: 10.1002/ecm.1545)

Jarrett, C., Haydon, D. T. , Morales, J. M. , Ferreira, D. F., Forzi, F. A., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2022) Integration of mark–recapture and acoustic detections for unbiased population estimation in animal communities. Ecology, 103(10), e3769. (doi: 10.1002/ecy.3769) (PMID:35620844)

Ngowo, H. , Limwagu, A. J., Ferguson, H. M. , Matthiopoulos, J. , Okumu, F. O. and Nelli, L. (2022) A statistical calibration tool for methods used to sample outdoor-biting mosquitoes. Parasites and Vectors, 15, 293. (doi: 10.1186/s13071-022-05403-7) (PMID:35978415) (PMCID:PMC9386948)

Carter, M. I. D. et al. (2022) Sympatric seals, satellite tracking and protected areas: habitat-based distribution estimates for conservation and management. Frontiers in Marine Science, 9, 875869. (doi: 10.3389/fmars.2022.875869)

Ngowo, H. S. , Okumu, F. O. , Hape, E. E., Mshani, I. H., Ferguson, H. M. and Matthiopoulos, J. (2022) Using Bayesian state-space models to understand the population dynamics of the dominant malaria vector, Anopheles funestus in rural Tanzania. Malaria Journal, 21(1), 161. (doi: 10.1186/s12936-022-04189-4) (PMID:35658961) (PMCID:PMC9166306)

Chadwick, F. J. et al. (2022) Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country. Nature Communications, 13, 2877. (doi: 10.1038/s41467-022-30640-w) (PMID:35618714) (PMCID:PMC9135686)

Dunn, R. E., Green, J. A., Wanless, S., Harris, M. P., Newell, M. A., Bogdanova, M. I., Horswill, C., Daunt, F. and Matthiopoulos, J. (2022) Modelling and mapping how common guillemots balance their energy budgets over a full annual cycle. Functional Ecology, (doi: 10.1111/1365-2435.14059)

Matthiopoulos, J. , Wakefield, E. , Jeglinski, J. W.E. , Furness, R. W., Trinder, M., Tyler, G., McCluskie, A., Allen, S., Braithwaite, J. and Evans, T. (2022) Integrated modelling of seabird-habitat associations from multi-platform data: a review. Journal of Applied Ecology, 59(4), pp. 909-920. (doi: 10.1111/1365-2664.14114)

Haddou, Y., Mancy, R. , Matthiopoulos, J. , Spatharis, S. and Dominoni, D. M. (2022) Widespread extinction debts and colonization credits in United States breeding bird communities. Nature Ecology and Evolution, 6(3), pp. 324-331. (doi: 10.1038/s41559-021-01653-3) (PMID:35145265) (PMCID:PMC8913367)

Fornace, K. , Manin, B. O., Matthiopoulos, J. , Ferguson, H. M. , Drakeley, C., Ahmed, K., Khoon, K. T., Ewers, R. M., Daim, S. and Chua, T. H. (2022) A protocol for a longitudinal, observational cohort study of infection and exposure to zoonotic and vector-borne diseases across a land-use gradient in Sabah, Malaysian Borneo: a socio-ecological systems approach. Wellcome Open Research, 7, 63. (doi: 10.12688/wellcomeopenres.17678.1) (PMID:35284640) (PMCID:PMC8886174)

2021

Wakefield, E. D. et al. (2021) The summer distribution, habitat associations and abundance of seabirds in the sub-polar frontal zone of the Northwest Atlantic. Progress in Oceanography, 198, 102657. (doi: 10.1016/j.pocean.2021.102657)

Sanou, A., Nelli, L. , Guelbéogo, W. M., Cissé, F., Tapsoba, M., Ouédraogo, P., Sagnon, N.’f., Ranson, H., Matthiopoulos, J. and Ferguson, H. M. (2021) Insecticide resistance and behavioural adaptation as a response to long-lasting insecticidal net deployment in malaria vectors in the Cascades region of Burkina Faso. Scientific Reports, 11, 17569. (doi: 10.1038/s41598-021-96759-w) (PMID:34475470) (PMCID:PMC8413378)

Aarts, G., Mul, E., Fieberg, J., Brasseur, S., van Gils, J. A., Matthiopoulos, J. and Riotte-Lambert, L. (2021) Individual-level memory is sufficient to create spatial segregation among neighboring colonies of central place foragers. American Naturalist, 198(2), E37-E52. (doi: 10.1086/715014) (PMID:34260868)

Sarker, S. K., Reeve, R. and Matthiopoulos, J. (2021) Solving the fourth-corner problem: forecasting ecosystem primary production from spatial multispecies trait-based models. Ecological Monographs, 91(3), e01454. (doi: 10.1002/ecm.1454)

Aldossari, S., Husmeier, D. and Matthiopoulos, J. (2021) Generalized functional responses in habitat selection fitted by decision trees and random forests. In: Ladde, Gangaram and Samia, Noelle (eds.) Proceedings of the 3rd International Conference on Statistics: Theory and Applications (ICSTA'21). Avestia Publishing: Ottawa, Canada, p. 125. ISBN 9781927877913 (doi: 10.11159/icsta21.125)

Horswill, C. , Manica, A., Daunt, F., Newell, M., Wanless, S., Wood, M. and Matthiopoulos, J. (2021) Improving assessments of data-limited populations using life-history theory. Journal of Applied Ecology, 58(6), pp. 1225-1236. (doi: 10.1111/1365-2664.13863)

Stokes, A. W., Catry, P., Matthiopoulos, J. , Boldenow, M., Clark, T.J., Guest, A., Marengo, I. and Wakefield, E. D. (2021) Combining survey and remotely sensed environmental data to estimate the habitat associations, abundance and distribution of breeding thin-billed prions Pachyptila belcheri and Wilson’s storm-petrels Oceanites oceanicus on a South Atlantic tussac island. Polar Biology, 44(4), pp. 809-821. (doi: 10.1007/s00300-021-02842-3)

Ngowo, H. S. , Hape, E. E., Matthiopoulos, J. , Ferguson, H. M. and Okumu, F. O. (2021) Fitness characteristics of the malaria vector Anopheles funestus during an attempted laboratory colonization. Malaria Journal, 20, 148. (doi: 10.1186/s12936-021-03677-3) (PMID:33712003) (PMCID:PMC7955623)

Hanlon, P. et al. (2021) COVID-19 – exploring the implications of long-term condition type and extent of multimorbidity on years of life lost: a modelling study. Wellcome Open Research, 5, 75. (doi: 10.12688/wellcomeopenres.15849.3) (PMID:33709037) (PMCID:PMC7927210)

2020

Aldossari, S., Matthiopoulos, J. and Husmeier, D. (2020) Statistical Modelling of Habitat Selection. In: Irigoien, Itziar, Lee, Dae-Jin, Martínez-Minaya, Joaquín and Rodríguez-Álvarez, María Xosé (eds.) Proceedings of the 35th International Workshop on Statistical Modelling. Servicio Editorial de la Universidad del País Vasco: Bilbao, Spain, pp. 275-279. ISBN 9788413192673

Matthiopoulos, J. , Fieberg, J., Aarts, G., Barraquand, F. and Kendall, B. E. (2020) Within reach? Habitat availability as a function of individual mobility and spatial structuring. American Naturalist, 195(6), pp. 1009-1026. (doi: 10.1086/708519) (PMID:32469662)

Baker, L., Matthiopoulos, J. , Müller, T., Freuling, C. and Hampson, K. (2020) Local rabies transmission and regional spatial coupling in European foxes. PLoS ONE, 15(5), e0220592. (doi: 10.1371/journal.pone.0220592) (PMID:32469961) (PMCID:PMC7259497)

Nelli, L. , Ferguson, H. M. and Matthiopoulos, J. (2020) Achieving explanatory depth and spatial breadth in infectious disease modelling: integrating active and passive case surveillance. Statistical Methods in Medical Research, 29(5), pp. 1273-1287. (doi: 10.1177/0962280219856380) (PMID:31213191)

Nelli, L. , Guelbeogo, M., Ferguson, H. M. , Ouattara, D., Tiono, A., N’Fale, S. and Matthiopoulos, J. (2020) Distance sampling for epidemiology: an interactive tool for estimating under-reporting of cases from clinic data. International Journal of Health Geographics, 19, 16. (doi: 10.1186/s12942-020-00209-1) (PMID:32312266) (PMCID:PMC7171748)

Riotte-Lambert, L. and Matthiopoulos, J. (2020) Environmental predictability as a cause and consequence of animal movement. Trends in Ecology and Evolution, 35(2), pp. 163-174. (doi: 10.1016/j.tree.2019.09.009) (PMID:31699411)

2019

Sanou, A. et al. (2019) Evaluation of mosquito electrocuting traps as a safe alternative to the human landing catch for measuring human exposure to malaria vectors in Burkina Faso. Malaria Journal, 18, 386. (doi: 10.1186/s12936-019-3030-5) (PMID:31791336) (PMCID:PMC6889701)

Sanou, A., Guelbéogo, W. M., Nelli, L. , Toé, K. H., Zongo, S., Ouédraogo, P., Cissé, F., Sagnon, N., Matthiopoulos, J. and Ferguson, H.M. (2019) Biting and Resting Behaviours of Malaria Vectors in Rural Burkina Faso Following Scaling up of LLINs. 6th Pan-African Mosquito Control Association (PAMCA) Annual Conference, Yaoundé, Cameroon, 23-25 Sep 2019.

Caillat, M., Cordes, L., Thompson, P., Matthiopoulos, J. and Smout, S. (2019) Use of state‐space modelling to identify ecological covariates associated with trends in pinniped demography. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(S1), pp. 101-118. (doi: 10.1002/aqc.3130)

Miller, J. A.O., Furness, R. W., Trinder, M. and Matthiopoulos, J. (2019) The sensitivity of seabird populations to density-dependence, environmental stochasticity and anthropogenic mortality. Journal of Applied Ecology, 56(9), pp. 2118-2130. (doi: 10.1111/1365-2664.13448)

Sarker, S. K., Matthiopoulos, J. , Mitchell, S. N. , Ahmed, Z. U., Al Mamun, M. B. and Reeve, R. (2019) 1980s–2010s: the world’s largest mangrove ecosystem is becoming homogenous. Biological Conservation, 236, pp. 79-91. (doi: 10.1016/j.biocon.2019.05.011) (PMID:31496538) (PMCID:PMC6716549)

Baker, L., Matthiopoulos, J. , Müller, T., Freuling, C. and Hampson, K. (2019) Optimising spatial and seasonal deployment of vaccination campaigns to eliminate wildlife rabies. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1776), 20180280. (doi: 10.1098/rstb.2018.0280) (PMID:31104608) (PMCID:PMC6558560)

Sarker, S. K., Reeve, R. , Paul, N. K. and Matthiopoulos, J. (2019) Modelling spatial biodiversity in the world’s largest mangrove ecosystem-The Bangladesh Sundarbans: a baseline for conservation. Diversity and Distributions, 25(5), pp. 729-742. (doi: 10.1111/ddi.12887)

Matthiopoulos, J. , Field, C. and MacLeod, R. (2019) Predicting population change from models based on habitat availability and utilization. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182911. (doi: 10.1098/rspb.2018.2911) (PMID:30991925) (PMCID:PMC6501931)

Horswill, C. , Kindsvater, H.K., Juan-Jordá, M.J., Dulvy, N.K., Mangel, M. and Matthiopoulos, J. (2019) Global reconstruction of life-history strategies: a case study using tunas. Journal of Applied Ecology, 56(4), pp. 855-865. (doi: 10.1111/1365-2664.13327) (PMID:31217633) (PMCID:PMC6559282)

Riotte-Lambert, L. and Matthiopoulos, J. (2019) Communal and efficient movement routines can develop spontaneously through public information use. Behavioral Ecology, 30(2), pp. 408-416. (doi: 10.1093/beheco/ary180)

Putman, R., Nelli, L. and Matthiopoulos, J. (2019) Changes in bodyweight and productivity in resource-restricted populations of red deer (Cervus elaphus) in response to deliberate reductions in density. European Journal of Wildlife Research, 65(1), 13. (doi: 10.1007/s10344-018-1251-5)

Clark, T. J., Matthiopoulos, J. , Bonnet-Lebrun, A.-S., Campioni, L., Catry, P., Marengo, I., Poncet, S. and Wakefield, E. (2019) Integrating habitat and partial survey data to estimate the regional population of a globally declining seabird species, the sooty shearwater. Global Ecology and Conservation, 17, e00554. (doi: 10.1016/j.gecco.2019.e00554)

Michelot, T., Blackwell, P. G. and Matthiopoulos, J. (2019) Linking resource selection and step selection models for habitat preferences in animals. Ecology, 100(1), e02452. (doi: 10.1002/ecy.2452) (PMID:30047993)

Ventura, F., Matthiopoulos, J. and Jeglinski, J. W.E. (2019) Minimal overlap between areas of high conservation priority for endangered Galapagos pinnipeds and the conservation zone of the Galapagos Marine Reserve. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(1), pp. 115-126. (doi: 10.1002/aqc.2943)

2018

Furness, R. W., Garthe, S., Trinder, M., Matthiopoulos, J. , Wanless, S. and Jeglinski, J. (2018) Nocturnal flight activity of northern gannets Morus bassanus and implications for modelling collision risk at offshore wind farms. Environmental Impact Assessment Review, 73, pp. 1-6. (doi: 10.1016/j.eiar.2018.06.006)

Ng'habi, K., Viana, M. , Matthiopoulos, J. , Lyimo, I., Killeen, G. and Ferguson, H. M. (2018) Mesocosm experiments reveal the impact of mosquito control measures on malaria vector life history and population dynamics. Scientific Reports, 8, 13949. (doi: 10.1038/s41598-018-31805-8) (PMID:30224714) (PMCID:PMC6141522)

Kindsvater, H. K., Dulvy, N. K., Horswill, C. , Juan-Jordá, M.-J., Mangel, M. and Matthiopoulos, J. (2018) Overcoming the data crisis in biodiversity conservation. Trends in Ecology and Evolution, 33(9), pp. 676-688. (doi: 10.1016/j.tree.2018.06.004) (PMID:30007845)

Fieberg, J. R., Forester, J. D., Street, G. M., Johnson, D. H., ArchMiller, A. A. and Matthiopoulos, J. (2018) Used-habitat calibration plots: a new procedure for validating species distribution, resource selection, and step-selection models. Ecography, 41(5), pp. 737-752. (doi: 10.1111/ecog.03123)

2017

Ngowo, H. S. , Kaindoa, E. W., Matthiopoulos, J. , Ferguson, H. M. and Okumu, F. O. (2017) Variations in household microclimate affect outdoor-biting behaviour of malaria vectors. Wellcome Open Research, 2, 102. (doi: 10.12688/wellcomeopenres.12928.1) (PMID:29552642) (PMCID:PMC5829465)

Husmeier, D. , Ferguson, E. , Matthiopoulos, J. and Insall, R. (2017) Statistical Inference of the Drivers of Collective Cell Movement. RSS 2017 Annual Conference, Glasgow, Scotland, 04-07 Sep 2017.

Ferguson, E. A. , Matthiopoulos, J. , Insall, R. H. and Husmeier, D. (2017) Statistical inference of the mechanisms driving collective cell movement. Journal of the Royal Statistical Society: Series C (Applied Statistics), 66(4), pp. 869-890. (doi: 10.1111/rssc.12203)

Ferguson, E. A. , Matthiopoulos, J. and Husmeier, D. (2017) Constructing Wildebeest Density Distributions by Spatio-temporal Smoothing of Ordinal Categorical Data Using GAMs. In: 32nd International Workshop on Statistical Modelling, Groningen, Netherlands, 03-07 Jul 2017, pp. 70-75.

2016

Russell, D. J.F., Hastie, G. D., Thompson, D., Janik, V. M., Hammond, P. S., Scott-Hayward, L. A.S., Matthiopoulos, J. , Jones, E. L. and McConnell, B. J. (2016) Avoidance of wind farms by harbour seals is limited to pile driving activities. Journal of Applied Ecology, 53(6), pp. 1642-1652. (doi: 10.1111/1365-2664.12678) (PMID:27867217) (PMCID:PMC5111737)

Ferguson, E. A. , Matthiopoulos, J. , Insall, R. H. and Husmeier, D. (2016) Inference of the drivers of collective movement in two cell types: Dictyostelium and melanoma. Journal of the Royal Society: Interface, 13(123), 20160695. (doi: 10.1098/rsif.2016.0695) (PMID:27798280)

Grecian, W. J. et al. (2016) Seabird diversity hotspot linked to ocean productivity in the Canary current large marine ecosystem. Biology Letters, 12(8), 20160024. (doi: 10.1098/rsbl.2016.0024)

Blackburn, S., Hopcraft, J. G. C. , Ogutu, J. O., Matthiopoulos, J. , Frank, L. and Singh, N. (2016) Human-wildlife conflict, benefit sharing and the survival of lions in pastoralist community-based conservancies. Journal of Applied Ecology, 53(4), pp. 1195-1205. (doi: 10.1111/1365-2664.12632)

Horswill, C. , Ratcliffe, N., Green, J.A., Phillips, R.A., Trathan, P.N. and Matthiopoulos, J. (2016) Unravelling the relative roles of top-down and bottom-up forces driving population change in an oceanic predator. Ecology, 97(8), pp. 1919-1928. (doi: 10.1002/ecy.1452) (PMID:27859185) (PMCID:PMC5008121)

Rysava, K. , McGill, R.A.R. , Matthiopoulos, J. and Hopcraft, J.G.C. (2016) Re-constructing nutritional history of Serengeti wildebeest from stable isotopes in tail hair: seasonal starvation patterns in an obligate grazer. Rapid Communications in Mass Spectrometry, 130(13), pp. 1461-1468. (doi: 10.1002/rcm.7572) (PMID:27321833)

Paton, R. S. and Matthiopoulos, J. (2016) Defining the scale of habitat availability for models of habitat selection. Ecology, 97(5), pp. 1113-1122. (doi: 10.1890/14-2241.1)

Sarker, S. K., Reeve, R. , Thompson, J., Paul, N. K. and Matthiopoulos, J. (2016) Are we failing to protect threatened mangroves in the Sundarbans world heritage ecosystem? Scientific Reports, 6, 21234. (doi: 10.1038/srep21234) (PMID:26878801) (PMCID:PMC4754640)

Horswill, C. , Matthiopoulos, J. , Ratcliffe, N., Green, J. A., Trathan, P. N., McGill, R.A.R. , Phillips, R. A. and O’Connell, T. C. (2016) Drivers of intrapopulation variation in resource use in a generalist predator, the macaroni penguin. Marine Ecology Progress Series, 548, pp. 233-247. (doi: 10.3354/meps11626)

Beyer, H. L., Gurarie, E., Börger, L., Panzacchi, M., Basille, M., Herfindal, I., Van Moorter, B., R. Lele, S., Matthiopoulos, J. and Fryxell, J. (2016) ‘You shall not pass!’: quantifying barrier permeability and proximity avoidance by animals. Journal of Animal Ecology, 85(1), pp. 43-53. (doi: 10.1111/1365-2656.12275) (PMID:25056207)

Viana, M. , Hughes, A., Matthiopoulos, J. , Ranson, H. and Ferguson, H. M. (2016) Delayed mortality effects cut the malaria transmission potential of insecticide resistant mosquitoes. Proceedings of the National Academy of Sciences of the United States of America, 113(32), pp. 8975-8980. (doi: 10.1073/pnas.1603431113) (PMID:27402740)

2015

Russell, D. J. F., McClintock, B. T., Matthiopoulos, J. , Thompson, P. M., Thompson, D., Hammond, P. S., Jones, E. L., MacKenzie, M. L., Moss, S. and McConnell, B. J. (2015) Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals. Oikos, 124(11), pp. 1462-1472. (doi: 10.1111/oik.01810)

Huon, M., Jones, E. L., Matthiopoulos, J. , McConnell, B., Caurant, F. and Vincent, C. (2015) Habitat selection of gray seals (Halichoerus grypus) in a marine protected area in France. Journal of Wildlife Management, 79(7), pp. 1091-1100. (doi: 10.1002/jwmg.929)

Barraquand, F., New, L.F., Redpath, S. and Matthiopoulos, J. (2015) Indirect effects of primary prey population dynamics on alternative prey. Theoretical Population Biology, 103, pp. 44-59. (doi: 10.1016/j.tpb.2015.04.002) (PMID:25930160)

Matthiopoulos, J. , Fieberg, J., Aarts, G., Beyer, H. L., Morales, J. M. and Haydon, D. T. (2015) Establishing the link between habitat selection and animal population dynamics. Ecological Monographs, 85(3), pp. 413-436. (doi: 10.1890/14-2244.1)

Photopoulou, T., Fedak, M. A., Matthiopoulos, J. , McConnell, B. and Lovell, P. (2015) The generalized data management and collection protocol for Conductivity-Temperature-Depth Satellite Relay Data Loggers. Animal Biotelemetry, 3(1), 21. (doi: 10.1186/s40317-015-0053-8)

Photopoulou, T., Lovell, P., Fedak, M. A., Thomas, L., Matthiopoulos, J. and Börger, L. (2015) Efficient abstracting of dive profiles using a broken-stick model. Methods in Ecology and Evolution, 6(3), pp. 278-288. (doi: 10.1111/2041-210X.12328)

Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi: 10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)

Jones, E. et al. (2015) Patterns of space use in sympatric marine colonial predators reveal scales of spatial partitioning. Marine Ecology Progress Series, 534, pp. 235-249. (doi: 10.3354/meps11370)

2014

Matthiopoulos, J. , Smout, S., Caillat, M., Cordes, L., Mackey, B. and Thompson, P. (2014) The importance of developing modeling frameworks to inform conservation decisions: a response to Lonergan. Oecologia, 175(4), pp. 1069-1071. (doi: 10.1007/s00442-014-2973-z)

Russell, D. J.F., Brasseur, S. M.J.M., Thompson, D., Hastie, G. D., Janik, V. M., Aarts, G., McClintock, B. T., Matthiopoulos, J. , Moss, S. E.W. and McConnell, B. (2014) Marine mammals trace anthropogenic structures at sea. Current Biology, 24(14), R638-R639. (doi: 10.1016/j.cub.2014.06.033)

Photopoulou, T., Fedak, M. A., Thomas, L. and Matthiopoulos, J. (2014) Spatial variation in maximum dive depth in gray seals in relation to foraging. Marine Mammal Science, 30(3), pp. 923-938. (doi: 10.1111/mms.12092)

Wakefield, E. D. , Phillips, R. A. and Matthiopoulos, J. (2014) Habitat-mediated population limitation in a colonial central-place forager: the sky is not the limit for the black-browed albatross. Proceedings of the Royal Society of London Series B: Biological Sciences, 281(1778), p. 20132883. (doi: 10.1098/rspb.2013.2883) (PMID:24430849) (PMCID:PMC3906941)

Matthiopoulos, J. , Cordes, L., Mackey, B., Thompson, D., Duck, C., Smout, S., Caillat, M. and Thompson, P. (2014) State-space modelling reveals proximate causes of harbour seal population declines. Oecologia, 174(1), pp. 151-162. (doi: 10.1007/s00442-013-2764-y)

Smout, S., Rindorf, A., Hammond, P. S., Harwood, J. and Matthiopoulos, J. (2014) Modelling prey consumption and switching by UK grey seals. ICES Journal of Marine Science, 71(1), pp. 81-89. (doi: 10.1093/icesjms/fst109)

Horswill, C. , Matthiopoulos, J. , Green, J. A., Meredith, M. P., Forcada, J., Peat, H., Preston, M., Trathan, P. N. and Ratcliffe, N. (2014) Survival in macaroni penguins and the relative importance of different drivers: individual traits, predation pressure and environmental variability. Journal of Animal Ecology, 83(5), pp. 1057-1067. (doi: 10.1111/1365-2656.12229) (PMID:24846695) (PMCID:PMC4284017)

2013

Smout, S., Rindorf, A., Wanless, S., Daunt, F., Harrison, M.P. and Matthiopoulos, J. (2013) Seabirds maintain offspring provisioning rate despite fluctuations in prey abundance: a multi-species functional response for guillemots in the North Sea. Journal of Applied Ecology, 50(4), pp. 1071-1079. (doi: 10.1111/1365-2664.12095)

McClintock, B.T., Russell, D.J.F., Matthiopoulos, J. and King, R. (2013) Combining individual animal movement and ancillary biotelemetry data to investigate population-level activity budgets. Ecology, 94(4), pp. 838-849. (doi: 10.1890/12-0954.1)

Russell, D.J.F., McConnell, B., Thompson, D., Duck, C., Morris, C., Harwood, J. and Matthiopoulos, J. (2013) Uncovering the links between foraging and breeding regions in a highly mobile mammal. Journal of Applied Ecology, 50(2), pp. 499-509. (doi: 10.1111/1365-2664.12048)

Aarts, G., Fieberg, J., Brasseur, S. and Matthiopoulos, J. (2013) Quantifying the effect of habitat availability on species distributions. Journal of Animal Ecology, 82(6), pp. 1135-1145. (doi: 10.1111/1365-2656.12061)

2012

Langrock, R., King, R., Matthiopoulos, J. , Thomas, L., Fortin, D. and Morales, J.M. (2012) Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions. Ecology, 93(11), pp. 2336-2342. (doi: 10.1890/11-2241.1)

McClintock, B.T., King, R., Thomas, L., Matthiopoulos, J. , McConnell, B.J. and Morales, J.M. (2012) A general discrete-time modeling framework for animal movement using multistate random walks. Ecological Monographs, 82(3), pp. 335-349. (doi: 10.1890/11-0326.1)

New, L.F., Buckland, S.T., Redpath, S. and Matthiopoulos, J. (2012) Modelling the impact of hen harrier management measures on a red grouse population in the UK. Oikos, 121(7), pp. 1061-1072. (doi: 10.1111/j.1600-0706.2011.19958.x)

Aarts, G., Fieberg, J. and Matthiopoulos, J. (2012) Comparative interpretation of count, presence-absence and point methods for species distribution models. Methods in Ecology and Evolution, 3(1), pp. 177-187. (doi: 10.1111/j.2041-210X.2011.00141.x)

Isojunno, S., Matthiopoulos, J. and Evans, P.G.H. (2012) Harbour porpoise habitat preferences: robust spatio-temporal inferences from opportunistic data. Marine Ecology Progress Series, 448, pp. 155-170. (doi: 10.3354/meps09415)

Murphy, S. et al. (2012) Age estimation, growth and age-related mortality of mediterranean monk seals Monachus monachus. Endangered Species Research, 16(2), pp. 149-163. (doi: 10.3354/esr00392)

2011

New, L.F., Buckland, S.T., Redpath, S. and Matthiopoulos, J. (2011) Hen harrier management: insights from demographic models fitted to population data. Journal of Applied Ecology, 48(5), pp. 1187-1194. (doi: 10.1111/j.1365-2664.2011.02013.x)

Pirotta, E., Matthiopoulos, J. , MacKenzie, M., Scott-Hayward, L. and Rendell, L. (2011) Modelling sperm whale habitat preference: a novel approach combining transect and follow data. Marine Ecology Progress Series, 436, pp. 257-272. (doi: 10.3354/meps09236)

Matthiopoulos, J. , Hebblewhite, M., Aarts, G. and Fieberg, J. (2011) Generalized functional responses for species distributions. Ecology, 92(3), pp. 583-589. (doi: 10.1890/10-0751.1)

Wakefield, E. D. , Phillips, R. A., Trathan, P. N., Arata, J., Gales, R., Huin, N., Robertson, G., Waugh, S. M., Weimerskirch, H. and Matthiopoulos, J. (2011) Habitat preference, accessibility, and competition limit the global distribution of breeding Black-browed albatrosses. Ecological Monographs, 81(1), pp. 141-167. (doi: 10.1890/09-0763.1)

Borger, L., Matthiopoulos, J. , Holdo, R.M., Morales, J.M., Couzin, I. and McCauley, E. (2011) Migration quantifed: constructing models and linking them with data. In: Milner-Gulland, E.J., Fryxell, J.M. and Sinclair, A.R.E. (eds.) Animal Migration: A Synthesis. Oxford University Press: Oxford, UK, pp. 111-128. ISBN 9780199568994

Matthiopoulos, J. (2011) How to be a Quantitative Ecologist: The ‘A to R’ of Green Mathematics and Statistics. Wiley: Chichester, UK. ISBN 9780470699782

2010

Struve, J. et al. (2010) Lost in space? Searching for directions in the spatial modelling of individuals, populations and species ranges. Biology Letters, 6(5), pp. 575-578. (doi: 10.1098/rsbl.2010.0338)

Beyer, H.L., Haydon, D.T. , Morales, J.M., Frair, J.L., Hebblewhite, M., Mitchell, M. and Matthiopoulos, J. (2010) The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2245-2254. (doi: 10.1098/rstb.2010.0083)

Fieberg, J., Matthiopoulos, J. , Hebblewhite, M., Boyce, M.S. and Frair, J.L. (2010) Correlation and studies of habitat selection: problem, red herring or opportunity? Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2233-2244. (doi: 10.1098/rstb.2010.0079)

Kie, J.G., Matthiopoulos, J. , Fieberg, J., Powell, R.A., Cagnacci, F., Mitchell, M.S., Gaillard, J.-M. and Moorcroft, P.R. (2010) The home-range concept: are traditional estimators still relevant with modern telemetry technology? Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2221-2231. (doi: 10.1098/rstb.2010.0093)

Morales, J.M., Moorcroft, P.R., Matthiopoulos, J. , Frair, J.L., Kie, J.G., Powell, R.A., Merrill, E.H. and Haydon, D.T. (2010) Building the bridge between animal movement and population dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2289-2301. (doi: 10.1098/rstb.2010.0082)

Matthiopoulos, J. and Aarts, G. (2010) The spatial analysis of marine mammal abundance. In: Boyd, I.L., Bowen, W.D. and Iverson, S.J. (eds.) Marine Mammal Ecology and Conservation: A Handbook of Techniques. Oxford University Press: Oxford, UK. ISBN 9780199216567

Smout, S., Asseburg, C., Matthiopoulos, J. , Fernández, C., Redpath, S., Thirgood, S. and Harwood, J. (2010) The functional response of a generalist predator. PLoS ONE, 5(5), e10761. (doi: 10.1371/journal.pone.0010761) (PMID:20523722) (PMCID:PMC2877704)

2009

Wakefield, E. D. , Phillips, R. A., Matthiopoulos, J. , Fukuda, A., Higuchi, H., Marshall, G. J. and Trathan, P. N. (2009) Wind field and sex constrain the flight speeds of central-place foraging albatrosses. Ecological Monographs, 79(4), pp. 663-679. (doi: 10.1890/07-2111.1)

New, L.F., Matthiopoulos, J. , Redpath, S. and Buckland, S.T. (2009) Fitting models of multiple hypotheses to partial population data: investigating the causes of cycles in red grouse. American Naturalist, 174(3), pp. 399-412. (doi: 10.1086/603625)

Wakefield, E. D. , Phillips, R. A. and Matthiopoulos, J. (2009) Quantifying habitat use and preferences of pelagic seabirds using individual movement data: a review. Marine Ecology Progress Series, 391, pp. 165-182. (doi: 10.3354/meps08203)

2008

Matthiopoulos, J. , Smout, S., Winship, A.J., Thompson, D., Boyd, I.L. and Harwood, J. (2008) Getting beneath the surface of marine mammal – fisheries competition. Mammal Review, 38(2-3), pp. 167-188. (doi: 10.1111/j.1365-2907.2008.00123.x)

Aarts, G., MacKenzie, M., McConnell, B., Fedak, M. and Matthiopoulos, J. (2008) Estimating space-use and habitat preference from wildlife telemetry data. Ecography, 31(1), pp. 140-160. (doi: 10.1111/j.2007.0906-7590.05236.x)

Hooker, S.K., Heaslip, S.G., Matthiopoulos, J. , Cox, O. and Boyd, I.L. (2008) Data sampling options for animal-borne video cameras: considerations based on deployments with antarctic fur seals. Marine Technology Society Journal, 42(2), pp. 65-75. (doi: 10.4031/002533208786829179)

Patterson, T., Thomas, L., Wilcox, C., Ovaskainen, O. and Matthiopoulos, J. (2008) State–space models of individual animal movement. Trends in Ecology and Evolution, 23(2), pp. 87-94. (doi: 10.1016/j.tree.2007.10.009)

2007

Stephenson, C.M., Matthiopoulos, J. and Harwood, J. (2007) Influence of the physical environment and conspecific aggression on the spatial arrangement of breeding grey seals. Ecological Informatics, 2(4), pp. 308-317. (doi: 10.1016/j.ecoinf.2007.09.001)

Matthiopoulos, J. , Graham, K., Smout, S., Asseburg, C., Redpath, S., Thirgood, S., Hudson, P. and Harwood, J. (2007) Sensitivity to assumptions in models of generalist predation on a cyclic prey. Ecology, 88(10), pp. 2576-2586.

Dendrinos, P., Karamanlidis, A.A., Kotomatas, S., Legakis, A., Tounta, E. and Matthiopoulos, J. (2007) Pupping habitat use in the Mediterranean monk seal: a long-term study. Marine Mammal Science, 23(3), pp. 615-628. (doi: 10.1111/j.1748-7692.2007.00121.x)

2006

Asseburg, C., Smout, S., Matthiopoulos, J. and Harwood, J. (2006) The functional response of generalist predators, and their implications for the monitoring of marine ecosystems. In: Boyd, I.L., Wanless, S. and Camphuysen, C.J. (eds.) Top Predators in Marine Ecosystems: Their Role in Monitoring and Management. Series: Conservation biology. Cambridge University Press: Cambridge, UK, pp. 262-274. ISBN 9780521847735

2005

Matthiopoulos, J. , Harwood, J. and Thomas, L. (2005) Metapopulation consequences of site fidelity for colonially breeding mammals and birds. Journal of Animal Ecology, 74(4), pp. 716-727. (doi: 10.1111/j.1365-2656.2005.00970.x)

Matthiopoulos, J. , Halley, J.M. and Moss, R. (2005) Socially induced red grouse population cycles need abrupt transitions between tolerance and aggression. Ecology, 86(7), pp. 1883-1893. (doi: 10.1890/04-0253)

2004

Matthiopoulos, J. , McConnell, B., Duck, C. and Fedak, M. (2004) Using satellite telemetry and aerial counts to estimate space use by grey seals around the British Isles. Journal of Applied Ecology, 41(3), pp. 476-491. (doi: 10.1111/j.0021-8901.2004.00911.x)

2003

Matthiopoulos, J. , Moss, R., Mougeot, F., Lambin, X. and Redpath, S.M. (2003) Territorial behaviour and population dynamics in red grouse Lagopus lagopus scoticus: II. Population models. Journal of Animal Ecology, 72(6), pp. 1083-1096. (doi: 10.1046/j.1365-2656.2003.00780.x)

Mougeot, F., Redpath, S.M., Moss, R., Matthiopoulos, J. and Hudson, P.J. (2003) Territorial behaviour and population dynamics in red grouse Lagopus lagopus scoticus. I. Population experiments. Journal of Animal Ecology, 72(6), pp. 1073-1082. (doi: 10.1046/j.1365-2656.2003.00781.x)

Matthiopoulos, J. (2003) Model-supervised kernel smoothing for the estimation of spatial usage. Oikos, 102(2), pp. 367-377. (doi: 10.1034/j.1600-0706.2003.12528.x)

Matthiopoulos, J. (2003) The use of space by animals as a function of accessibility and preference. Ecological Modelling, 159(2-3), pp. 239-268. (doi: 10.1016/S0304-3800(02)00293-4)

Hammond, P.S., MacLeod, K., Northridge, S.P., Thompson, D. and Matthiopoulos, J. (2003) Background Information to Marine Mammals. [Research Reports or Papers]

Matthiopoulos, J. and Hammond, P.S. (2003) Interactions Between Grey Seals and Fisheries: A Forecasting Model for Evaluating Management Options. [Research Reports or Papers]

2002

Matthiopoulos, J. , Moss, R. and Lambin, X. (2002) The kin facilitation hypothesis for red grouse population cycles: territorial dynamics of the family cluster. Ecological Modelling, 147(3), pp. 291-307. (doi: 10.1016/S0304-3800(01)00420-3)

2001

Matthiopoulos, J. , Hammond, P.S. and McConnell, B. (2001) Interactions Between Grey Seals and Fisheries. [Research Reports or Papers]

2000

Matthiopoulos, J. , Moss, R. and Lambin, X. (2000) The kin-facilitation hypothesis for red grouse population cycles: territory sharing between relatives. Ecological Modelling, 127(1), pp. 53-63. (doi: 10.1016/S0304-3800(99)00199-4)

Hammond, P.S., McConnell, B.J., Stevick, P.T., Matthiopoulos, J. , Lovell, P. and Fedak, M.A. (2000) The foraging distribution and behaviour of grey seals and humpback whales: practical lessons for determining critical habitat. In: 14th Annual Conference of the European Cetacean Society, Cork, Ireland, 2 -5 Apr 2000,

1999

Harwood, J. et al. (1999) Effects Of Large-Scale Industrial Fisheries On Non-Target Species. [Research Reports or Papers]

1998

Matthiopoulos, J. , Moss, R. and Lambin, X. (1998) Models of Red Grouse cycles. A family affair? Oikos, 82(3), pp. 574-590.

1997

Smith, A., Matthiopoulos, J. and Priede, I.G. (1997) Areal coverage of the ocean floor by the deep-sea elasipodid holothurian Oneirophanta mutabilis: estimates using systematic, random and directional search strategy simulations. Deep-Sea Research Part I: Oceanographic Research Papers, 44(3), pp. 477-486. (doi: 10.1016/S0967-0637(96)00112-4)

Articles

Bradfer-Lawrence, T. et al. (2025) Spillovers and legacies of land management on temperate woodland biodiversity. Nature Ecology and Evolution, (doi: 10.1038/s41559-025-02688-6) (PMID:40269116) (Early Online Publication)

Matthiopoulos, J. , Thompson, K. R., Watt, L., O'Brien, S. H. and Furness, R. W. (2025) Reconstructing and forecasting the dynamics of an internationally important population of Manx shearwaters. Endangered Species Research, (doi: 10.3354/esr01399) (Accepted for Publication)

Niven, H. , Jeglinski, J. W. E. , Aarts, G., Wakefield, E. D. and Matthiopoulos, J. (2025) Towards biologically realistic estimates of home range and spatial exposure for colonial animals. Methods in Ecology and Evolution, (Accepted for Publication)

Blackwell, P. G. and Matthiopoulos, J. (2024) Joint inference for telemetry and spatial survey data. Ecology, 105(12), e4457. (doi: 10.1002/ecy.4457) (PMID:39475100) (PMCID:PMC11610709)

Jeglinski, J. W.E. , Niven, H. I. , Wanless, S., Barrett, R. T., Harris, M. P., Dierschke, J. and Matthiopoulos, J. (2024) Past and future effects of climate on the metapopulation dynamics of a Northeast Atlantic seabird across two centuries. Ecology Letters, 27(12), e14479. (doi: 10.1111/ele.14479) (PMID:39739319) (PMCID:PMC11686948)

Nelli, L. et al. (2024) Freedom from infection: enhancing decision-making for malaria elimination. BMJ Global Health, 9(12), e014412. (doi: 10.1136/bmjgh-2023-014412)

Chadwick, F. J., Haydon, D. T. , Husmeier, D. , Ovaskainen, O. and Matthiopoulos, J. (2024) LIES of omission: complex observation processes in ecology. Trends in Ecology and Evolution, 39(4), pp. 368-380. (doi: 10.1016/j.tree.2023.10.009) (PMID:37949794)

Jeglinski, J. W.E. , Lane, J. V., Votier, S. C., Furness, R. W., Hamer, K. C., McCafferty, D. J. , Nager, R. G. , Sheddan, M., Wanless, S. and Matthiopoulos, J. (2024) HPAIV outbreak triggers short-term colony connectivity in a seabird metapopulation. Scientific Reports, 14, 3126. (doi: 10.1038/s41598-024-53550-x) (PMID:38326368) (PMCID:PMC10850054)

Jarrett, C., Cyril, K., Haydon, D. T. , Wandji, C. A., Ferreira, D. F., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2024) Fewer pests and more ecosystem service‐providing arthropods in shady African cocoa farms: insights from a data integration study. Journal of Applied Ecology, 61(2), pp. 304-315. (doi: 10.1111/1365-2664.14563)

Ribeiro, R. , Matthiopoulos, J. , Lindgren, F., Tello, C., Zariquiey, C. M., Valderrama, W., Rocke, T. E. and Streicker, D. G. (2023) Incorporating environmental heterogeneity and observation effort to predict host distribution and viral spillover from a bat reservoir. Proceedings of the Royal Society B: Biological Sciences, 290(2011), 20231739. (doi: 10.1098/rspb.2023.1739) (PMID:37989240) (PMCID:PMC10688441)

Grémillet, D. et al. (2023) Strong breeding colony fidelity in northern gannets following high pathogenicity avian influenza virus (HPAIV) outbreak. Biological Conservation, 286, 110269. (doi: 10.1016/j.biocon.2023.110269)

Johnson, E. et al. (2023) Landscape drives zoonotic malaria prevalence in non-human primates. eLife, (doi: 10.7554/eLife.88616) (Early Online Publication)

Jeglinski, J. W.E. , Wanless, S., Murray, S., Barrett, R. T., Gardarsson, A., Harris, M. P., Dierschke, J., Strøm, H., Lorentsen, S.-H. and Matthiopoulos, J. (2023) Metapopulation regulation acts at multiple spatial scales: insights from a century of seabird colony census data. Ecological Monographs, 93(2), e1569. (doi: 10.1002/ecm.1569)

Viana, M. et al. (2023) Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science Advances, 9(10), eadd7437. (doi: 10.1126/sciadv.add7437) (PMID:36897949) (PMCID:PMC10005164)

Aldossari, S., Husmeier, D. and Matthiopoulos, J. (2022) Transferable species distribution modelling: comparative performance of Generalised Functional Response models. Ecological Informatics, 71, 101803. (doi: 10.1016/j.ecoinf.2022.101803)

Matthiopoulos, J. (2022) Defining, estimating, and understanding the fundamental niches of complex animals in heterogeneous environments. Ecological Monographs, 92(4), e1545. (doi: 10.1002/ecm.1545)

Jarrett, C., Haydon, D. T. , Morales, J. M. , Ferreira, D. F., Forzi, F. A., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2022) Integration of mark–recapture and acoustic detections for unbiased population estimation in animal communities. Ecology, 103(10), e3769. (doi: 10.1002/ecy.3769) (PMID:35620844)

Ngowo, H. , Limwagu, A. J., Ferguson, H. M. , Matthiopoulos, J. , Okumu, F. O. and Nelli, L. (2022) A statistical calibration tool for methods used to sample outdoor-biting mosquitoes. Parasites and Vectors, 15, 293. (doi: 10.1186/s13071-022-05403-7) (PMID:35978415) (PMCID:PMC9386948)

Carter, M. I. D. et al. (2022) Sympatric seals, satellite tracking and protected areas: habitat-based distribution estimates for conservation and management. Frontiers in Marine Science, 9, 875869. (doi: 10.3389/fmars.2022.875869)

Ngowo, H. S. , Okumu, F. O. , Hape, E. E., Mshani, I. H., Ferguson, H. M. and Matthiopoulos, J. (2022) Using Bayesian state-space models to understand the population dynamics of the dominant malaria vector, Anopheles funestus in rural Tanzania. Malaria Journal, 21(1), 161. (doi: 10.1186/s12936-022-04189-4) (PMID:35658961) (PMCID:PMC9166306)

Chadwick, F. J. et al. (2022) Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country. Nature Communications, 13, 2877. (doi: 10.1038/s41467-022-30640-w) (PMID:35618714) (PMCID:PMC9135686)

Dunn, R. E., Green, J. A., Wanless, S., Harris, M. P., Newell, M. A., Bogdanova, M. I., Horswill, C., Daunt, F. and Matthiopoulos, J. (2022) Modelling and mapping how common guillemots balance their energy budgets over a full annual cycle. Functional Ecology, (doi: 10.1111/1365-2435.14059)

Matthiopoulos, J. , Wakefield, E. , Jeglinski, J. W.E. , Furness, R. W., Trinder, M., Tyler, G., McCluskie, A., Allen, S., Braithwaite, J. and Evans, T. (2022) Integrated modelling of seabird-habitat associations from multi-platform data: a review. Journal of Applied Ecology, 59(4), pp. 909-920. (doi: 10.1111/1365-2664.14114)

Haddou, Y., Mancy, R. , Matthiopoulos, J. , Spatharis, S. and Dominoni, D. M. (2022) Widespread extinction debts and colonization credits in United States breeding bird communities. Nature Ecology and Evolution, 6(3), pp. 324-331. (doi: 10.1038/s41559-021-01653-3) (PMID:35145265) (PMCID:PMC8913367)

Fornace, K. , Manin, B. O., Matthiopoulos, J. , Ferguson, H. M. , Drakeley, C., Ahmed, K., Khoon, K. T., Ewers, R. M., Daim, S. and Chua, T. H. (2022) A protocol for a longitudinal, observational cohort study of infection and exposure to zoonotic and vector-borne diseases across a land-use gradient in Sabah, Malaysian Borneo: a socio-ecological systems approach. Wellcome Open Research, 7, 63. (doi: 10.12688/wellcomeopenres.17678.1) (PMID:35284640) (PMCID:PMC8886174)

Wakefield, E. D. et al. (2021) The summer distribution, habitat associations and abundance of seabirds in the sub-polar frontal zone of the Northwest Atlantic. Progress in Oceanography, 198, 102657. (doi: 10.1016/j.pocean.2021.102657)

Sanou, A., Nelli, L. , Guelbéogo, W. M., Cissé, F., Tapsoba, M., Ouédraogo, P., Sagnon, N.’f., Ranson, H., Matthiopoulos, J. and Ferguson, H. M. (2021) Insecticide resistance and behavioural adaptation as a response to long-lasting insecticidal net deployment in malaria vectors in the Cascades region of Burkina Faso. Scientific Reports, 11, 17569. (doi: 10.1038/s41598-021-96759-w) (PMID:34475470) (PMCID:PMC8413378)

Aarts, G., Mul, E., Fieberg, J., Brasseur, S., van Gils, J. A., Matthiopoulos, J. and Riotte-Lambert, L. (2021) Individual-level memory is sufficient to create spatial segregation among neighboring colonies of central place foragers. American Naturalist, 198(2), E37-E52. (doi: 10.1086/715014) (PMID:34260868)

Sarker, S. K., Reeve, R. and Matthiopoulos, J. (2021) Solving the fourth-corner problem: forecasting ecosystem primary production from spatial multispecies trait-based models. Ecological Monographs, 91(3), e01454. (doi: 10.1002/ecm.1454)

Horswill, C. , Manica, A., Daunt, F., Newell, M., Wanless, S., Wood, M. and Matthiopoulos, J. (2021) Improving assessments of data-limited populations using life-history theory. Journal of Applied Ecology, 58(6), pp. 1225-1236. (doi: 10.1111/1365-2664.13863)

Stokes, A. W., Catry, P., Matthiopoulos, J. , Boldenow, M., Clark, T.J., Guest, A., Marengo, I. and Wakefield, E. D. (2021) Combining survey and remotely sensed environmental data to estimate the habitat associations, abundance and distribution of breeding thin-billed prions Pachyptila belcheri and Wilson’s storm-petrels Oceanites oceanicus on a South Atlantic tussac island. Polar Biology, 44(4), pp. 809-821. (doi: 10.1007/s00300-021-02842-3)

Ngowo, H. S. , Hape, E. E., Matthiopoulos, J. , Ferguson, H. M. and Okumu, F. O. (2021) Fitness characteristics of the malaria vector Anopheles funestus during an attempted laboratory colonization. Malaria Journal, 20, 148. (doi: 10.1186/s12936-021-03677-3) (PMID:33712003) (PMCID:PMC7955623)

Hanlon, P. et al. (2021) COVID-19 – exploring the implications of long-term condition type and extent of multimorbidity on years of life lost: a modelling study. Wellcome Open Research, 5, 75. (doi: 10.12688/wellcomeopenres.15849.3) (PMID:33709037) (PMCID:PMC7927210)

Matthiopoulos, J. , Fieberg, J., Aarts, G., Barraquand, F. and Kendall, B. E. (2020) Within reach? Habitat availability as a function of individual mobility and spatial structuring. American Naturalist, 195(6), pp. 1009-1026. (doi: 10.1086/708519) (PMID:32469662)

Baker, L., Matthiopoulos, J. , Müller, T., Freuling, C. and Hampson, K. (2020) Local rabies transmission and regional spatial coupling in European foxes. PLoS ONE, 15(5), e0220592. (doi: 10.1371/journal.pone.0220592) (PMID:32469961) (PMCID:PMC7259497)

Nelli, L. , Ferguson, H. M. and Matthiopoulos, J. (2020) Achieving explanatory depth and spatial breadth in infectious disease modelling: integrating active and passive case surveillance. Statistical Methods in Medical Research, 29(5), pp. 1273-1287. (doi: 10.1177/0962280219856380) (PMID:31213191)

Nelli, L. , Guelbeogo, M., Ferguson, H. M. , Ouattara, D., Tiono, A., N’Fale, S. and Matthiopoulos, J. (2020) Distance sampling for epidemiology: an interactive tool for estimating under-reporting of cases from clinic data. International Journal of Health Geographics, 19, 16. (doi: 10.1186/s12942-020-00209-1) (PMID:32312266) (PMCID:PMC7171748)

Riotte-Lambert, L. and Matthiopoulos, J. (2020) Environmental predictability as a cause and consequence of animal movement. Trends in Ecology and Evolution, 35(2), pp. 163-174. (doi: 10.1016/j.tree.2019.09.009) (PMID:31699411)

Sanou, A. et al. (2019) Evaluation of mosquito electrocuting traps as a safe alternative to the human landing catch for measuring human exposure to malaria vectors in Burkina Faso. Malaria Journal, 18, 386. (doi: 10.1186/s12936-019-3030-5) (PMID:31791336) (PMCID:PMC6889701)

Caillat, M., Cordes, L., Thompson, P., Matthiopoulos, J. and Smout, S. (2019) Use of state‐space modelling to identify ecological covariates associated with trends in pinniped demography. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(S1), pp. 101-118. (doi: 10.1002/aqc.3130)

Miller, J. A.O., Furness, R. W., Trinder, M. and Matthiopoulos, J. (2019) The sensitivity of seabird populations to density-dependence, environmental stochasticity and anthropogenic mortality. Journal of Applied Ecology, 56(9), pp. 2118-2130. (doi: 10.1111/1365-2664.13448)

Sarker, S. K., Matthiopoulos, J. , Mitchell, S. N. , Ahmed, Z. U., Al Mamun, M. B. and Reeve, R. (2019) 1980s–2010s: the world’s largest mangrove ecosystem is becoming homogenous. Biological Conservation, 236, pp. 79-91. (doi: 10.1016/j.biocon.2019.05.011) (PMID:31496538) (PMCID:PMC6716549)

Baker, L., Matthiopoulos, J. , Müller, T., Freuling, C. and Hampson, K. (2019) Optimising spatial and seasonal deployment of vaccination campaigns to eliminate wildlife rabies. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1776), 20180280. (doi: 10.1098/rstb.2018.0280) (PMID:31104608) (PMCID:PMC6558560)

Sarker, S. K., Reeve, R. , Paul, N. K. and Matthiopoulos, J. (2019) Modelling spatial biodiversity in the world’s largest mangrove ecosystem-The Bangladesh Sundarbans: a baseline for conservation. Diversity and Distributions, 25(5), pp. 729-742. (doi: 10.1111/ddi.12887)

Matthiopoulos, J. , Field, C. and MacLeod, R. (2019) Predicting population change from models based on habitat availability and utilization. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182911. (doi: 10.1098/rspb.2018.2911) (PMID:30991925) (PMCID:PMC6501931)

Horswill, C. , Kindsvater, H.K., Juan-Jordá, M.J., Dulvy, N.K., Mangel, M. and Matthiopoulos, J. (2019) Global reconstruction of life-history strategies: a case study using tunas. Journal of Applied Ecology, 56(4), pp. 855-865. (doi: 10.1111/1365-2664.13327) (PMID:31217633) (PMCID:PMC6559282)

Riotte-Lambert, L. and Matthiopoulos, J. (2019) Communal and efficient movement routines can develop spontaneously through public information use. Behavioral Ecology, 30(2), pp. 408-416. (doi: 10.1093/beheco/ary180)

Putman, R., Nelli, L. and Matthiopoulos, J. (2019) Changes in bodyweight and productivity in resource-restricted populations of red deer (Cervus elaphus) in response to deliberate reductions in density. European Journal of Wildlife Research, 65(1), 13. (doi: 10.1007/s10344-018-1251-5)

Clark, T. J., Matthiopoulos, J. , Bonnet-Lebrun, A.-S., Campioni, L., Catry, P., Marengo, I., Poncet, S. and Wakefield, E. (2019) Integrating habitat and partial survey data to estimate the regional population of a globally declining seabird species, the sooty shearwater. Global Ecology and Conservation, 17, e00554. (doi: 10.1016/j.gecco.2019.e00554)

Michelot, T., Blackwell, P. G. and Matthiopoulos, J. (2019) Linking resource selection and step selection models for habitat preferences in animals. Ecology, 100(1), e02452. (doi: 10.1002/ecy.2452) (PMID:30047993)

Ventura, F., Matthiopoulos, J. and Jeglinski, J. W.E. (2019) Minimal overlap between areas of high conservation priority for endangered Galapagos pinnipeds and the conservation zone of the Galapagos Marine Reserve. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(1), pp. 115-126. (doi: 10.1002/aqc.2943)

Furness, R. W., Garthe, S., Trinder, M., Matthiopoulos, J. , Wanless, S. and Jeglinski, J. (2018) Nocturnal flight activity of northern gannets Morus bassanus and implications for modelling collision risk at offshore wind farms. Environmental Impact Assessment Review, 73, pp. 1-6. (doi: 10.1016/j.eiar.2018.06.006)

Ng'habi, K., Viana, M. , Matthiopoulos, J. , Lyimo, I., Killeen, G. and Ferguson, H. M. (2018) Mesocosm experiments reveal the impact of mosquito control measures on malaria vector life history and population dynamics. Scientific Reports, 8, 13949. (doi: 10.1038/s41598-018-31805-8) (PMID:30224714) (PMCID:PMC6141522)

Kindsvater, H. K., Dulvy, N. K., Horswill, C. , Juan-Jordá, M.-J., Mangel, M. and Matthiopoulos, J. (2018) Overcoming the data crisis in biodiversity conservation. Trends in Ecology and Evolution, 33(9), pp. 676-688. (doi: 10.1016/j.tree.2018.06.004) (PMID:30007845)

Fieberg, J. R., Forester, J. D., Street, G. M., Johnson, D. H., ArchMiller, A. A. and Matthiopoulos, J. (2018) Used-habitat calibration plots: a new procedure for validating species distribution, resource selection, and step-selection models. Ecography, 41(5), pp. 737-752. (doi: 10.1111/ecog.03123)

Ngowo, H. S. , Kaindoa, E. W., Matthiopoulos, J. , Ferguson, H. M. and Okumu, F. O. (2017) Variations in household microclimate affect outdoor-biting behaviour of malaria vectors. Wellcome Open Research, 2, 102. (doi: 10.12688/wellcomeopenres.12928.1) (PMID:29552642) (PMCID:PMC5829465)

Ferguson, E. A. , Matthiopoulos, J. , Insall, R. H. and Husmeier, D. (2017) Statistical inference of the mechanisms driving collective cell movement. Journal of the Royal Statistical Society: Series C (Applied Statistics), 66(4), pp. 869-890. (doi: 10.1111/rssc.12203)

Russell, D. J.F., Hastie, G. D., Thompson, D., Janik, V. M., Hammond, P. S., Scott-Hayward, L. A.S., Matthiopoulos, J. , Jones, E. L. and McConnell, B. J. (2016) Avoidance of wind farms by harbour seals is limited to pile driving activities. Journal of Applied Ecology, 53(6), pp. 1642-1652. (doi: 10.1111/1365-2664.12678) (PMID:27867217) (PMCID:PMC5111737)

Ferguson, E. A. , Matthiopoulos, J. , Insall, R. H. and Husmeier, D. (2016) Inference of the drivers of collective movement in two cell types: Dictyostelium and melanoma. Journal of the Royal Society: Interface, 13(123), 20160695. (doi: 10.1098/rsif.2016.0695) (PMID:27798280)

Grecian, W. J. et al. (2016) Seabird diversity hotspot linked to ocean productivity in the Canary current large marine ecosystem. Biology Letters, 12(8), 20160024. (doi: 10.1098/rsbl.2016.0024)

Blackburn, S., Hopcraft, J. G. C. , Ogutu, J. O., Matthiopoulos, J. , Frank, L. and Singh, N. (2016) Human-wildlife conflict, benefit sharing and the survival of lions in pastoralist community-based conservancies. Journal of Applied Ecology, 53(4), pp. 1195-1205. (doi: 10.1111/1365-2664.12632)

Horswill, C. , Ratcliffe, N., Green, J.A., Phillips, R.A., Trathan, P.N. and Matthiopoulos, J. (2016) Unravelling the relative roles of top-down and bottom-up forces driving population change in an oceanic predator. Ecology, 97(8), pp. 1919-1928. (doi: 10.1002/ecy.1452) (PMID:27859185) (PMCID:PMC5008121)

Rysava, K. , McGill, R.A.R. , Matthiopoulos, J. and Hopcraft, J.G.C. (2016) Re-constructing nutritional history of Serengeti wildebeest from stable isotopes in tail hair: seasonal starvation patterns in an obligate grazer. Rapid Communications in Mass Spectrometry, 130(13), pp. 1461-1468. (doi: 10.1002/rcm.7572) (PMID:27321833)

Paton, R. S. and Matthiopoulos, J. (2016) Defining the scale of habitat availability for models of habitat selection. Ecology, 97(5), pp. 1113-1122. (doi: 10.1890/14-2241.1)

Sarker, S. K., Reeve, R. , Thompson, J., Paul, N. K. and Matthiopoulos, J. (2016) Are we failing to protect threatened mangroves in the Sundarbans world heritage ecosystem? Scientific Reports, 6, 21234. (doi: 10.1038/srep21234) (PMID:26878801) (PMCID:PMC4754640)

Horswill, C. , Matthiopoulos, J. , Ratcliffe, N., Green, J. A., Trathan, P. N., McGill, R.A.R. , Phillips, R. A. and O’Connell, T. C. (2016) Drivers of intrapopulation variation in resource use in a generalist predator, the macaroni penguin. Marine Ecology Progress Series, 548, pp. 233-247. (doi: 10.3354/meps11626)

Beyer, H. L., Gurarie, E., Börger, L., Panzacchi, M., Basille, M., Herfindal, I., Van Moorter, B., R. Lele, S., Matthiopoulos, J. and Fryxell, J. (2016) ‘You shall not pass!’: quantifying barrier permeability and proximity avoidance by animals. Journal of Animal Ecology, 85(1), pp. 43-53. (doi: 10.1111/1365-2656.12275) (PMID:25056207)

Viana, M. , Hughes, A., Matthiopoulos, J. , Ranson, H. and Ferguson, H. M. (2016) Delayed mortality effects cut the malaria transmission potential of insecticide resistant mosquitoes. Proceedings of the National Academy of Sciences of the United States of America, 113(32), pp. 8975-8980. (doi: 10.1073/pnas.1603431113) (PMID:27402740)

Russell, D. J. F., McClintock, B. T., Matthiopoulos, J. , Thompson, P. M., Thompson, D., Hammond, P. S., Jones, E. L., MacKenzie, M. L., Moss, S. and McConnell, B. J. (2015) Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals. Oikos, 124(11), pp. 1462-1472. (doi: 10.1111/oik.01810)

Huon, M., Jones, E. L., Matthiopoulos, J. , McConnell, B., Caurant, F. and Vincent, C. (2015) Habitat selection of gray seals (Halichoerus grypus) in a marine protected area in France. Journal of Wildlife Management, 79(7), pp. 1091-1100. (doi: 10.1002/jwmg.929)

Barraquand, F., New, L.F., Redpath, S. and Matthiopoulos, J. (2015) Indirect effects of primary prey population dynamics on alternative prey. Theoretical Population Biology, 103, pp. 44-59. (doi: 10.1016/j.tpb.2015.04.002) (PMID:25930160)

Matthiopoulos, J. , Fieberg, J., Aarts, G., Beyer, H. L., Morales, J. M. and Haydon, D. T. (2015) Establishing the link between habitat selection and animal population dynamics. Ecological Monographs, 85(3), pp. 413-436. (doi: 10.1890/14-2244.1)

Photopoulou, T., Fedak, M. A., Matthiopoulos, J. , McConnell, B. and Lovell, P. (2015) The generalized data management and collection protocol for Conductivity-Temperature-Depth Satellite Relay Data Loggers. Animal Biotelemetry, 3(1), 21. (doi: 10.1186/s40317-015-0053-8)

Photopoulou, T., Lovell, P., Fedak, M. A., Thomas, L., Matthiopoulos, J. and Börger, L. (2015) Efficient abstracting of dive profiles using a broken-stick model. Methods in Ecology and Evolution, 6(3), pp. 278-288. (doi: 10.1111/2041-210X.12328)

Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi: 10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)

Jones, E. et al. (2015) Patterns of space use in sympatric marine colonial predators reveal scales of spatial partitioning. Marine Ecology Progress Series, 534, pp. 235-249. (doi: 10.3354/meps11370)

Matthiopoulos, J. , Smout, S., Caillat, M., Cordes, L., Mackey, B. and Thompson, P. (2014) The importance of developing modeling frameworks to inform conservation decisions: a response to Lonergan. Oecologia, 175(4), pp. 1069-1071. (doi: 10.1007/s00442-014-2973-z)

Russell, D. J.F., Brasseur, S. M.J.M., Thompson, D., Hastie, G. D., Janik, V. M., Aarts, G., McClintock, B. T., Matthiopoulos, J. , Moss, S. E.W. and McConnell, B. (2014) Marine mammals trace anthropogenic structures at sea. Current Biology, 24(14), R638-R639. (doi: 10.1016/j.cub.2014.06.033)

Photopoulou, T., Fedak, M. A., Thomas, L. and Matthiopoulos, J. (2014) Spatial variation in maximum dive depth in gray seals in relation to foraging. Marine Mammal Science, 30(3), pp. 923-938. (doi: 10.1111/mms.12092)

Wakefield, E. D. , Phillips, R. A. and Matthiopoulos, J. (2014) Habitat-mediated population limitation in a colonial central-place forager: the sky is not the limit for the black-browed albatross. Proceedings of the Royal Society of London Series B: Biological Sciences, 281(1778), p. 20132883. (doi: 10.1098/rspb.2013.2883) (PMID:24430849) (PMCID:PMC3906941)

Matthiopoulos, J. , Cordes, L., Mackey, B., Thompson, D., Duck, C., Smout, S., Caillat, M. and Thompson, P. (2014) State-space modelling reveals proximate causes of harbour seal population declines. Oecologia, 174(1), pp. 151-162. (doi: 10.1007/s00442-013-2764-y)

Smout, S., Rindorf, A., Hammond, P. S., Harwood, J. and Matthiopoulos, J. (2014) Modelling prey consumption and switching by UK grey seals. ICES Journal of Marine Science, 71(1), pp. 81-89. (doi: 10.1093/icesjms/fst109)

Horswill, C. , Matthiopoulos, J. , Green, J. A., Meredith, M. P., Forcada, J., Peat, H., Preston, M., Trathan, P. N. and Ratcliffe, N. (2014) Survival in macaroni penguins and the relative importance of different drivers: individual traits, predation pressure and environmental variability. Journal of Animal Ecology, 83(5), pp. 1057-1067. (doi: 10.1111/1365-2656.12229) (PMID:24846695) (PMCID:PMC4284017)

Smout, S., Rindorf, A., Wanless, S., Daunt, F., Harrison, M.P. and Matthiopoulos, J. (2013) Seabirds maintain offspring provisioning rate despite fluctuations in prey abundance: a multi-species functional response for guillemots in the North Sea. Journal of Applied Ecology, 50(4), pp. 1071-1079. (doi: 10.1111/1365-2664.12095)

McClintock, B.T., Russell, D.J.F., Matthiopoulos, J. and King, R. (2013) Combining individual animal movement and ancillary biotelemetry data to investigate population-level activity budgets. Ecology, 94(4), pp. 838-849. (doi: 10.1890/12-0954.1)

Russell, D.J.F., McConnell, B., Thompson, D., Duck, C., Morris, C., Harwood, J. and Matthiopoulos, J. (2013) Uncovering the links between foraging and breeding regions in a highly mobile mammal. Journal of Applied Ecology, 50(2), pp. 499-509. (doi: 10.1111/1365-2664.12048)

Aarts, G., Fieberg, J., Brasseur, S. and Matthiopoulos, J. (2013) Quantifying the effect of habitat availability on species distributions. Journal of Animal Ecology, 82(6), pp. 1135-1145. (doi: 10.1111/1365-2656.12061)

Langrock, R., King, R., Matthiopoulos, J. , Thomas, L., Fortin, D. and Morales, J.M. (2012) Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions. Ecology, 93(11), pp. 2336-2342. (doi: 10.1890/11-2241.1)

McClintock, B.T., King, R., Thomas, L., Matthiopoulos, J. , McConnell, B.J. and Morales, J.M. (2012) A general discrete-time modeling framework for animal movement using multistate random walks. Ecological Monographs, 82(3), pp. 335-349. (doi: 10.1890/11-0326.1)

New, L.F., Buckland, S.T., Redpath, S. and Matthiopoulos, J. (2012) Modelling the impact of hen harrier management measures on a red grouse population in the UK. Oikos, 121(7), pp. 1061-1072. (doi: 10.1111/j.1600-0706.2011.19958.x)

Aarts, G., Fieberg, J. and Matthiopoulos, J. (2012) Comparative interpretation of count, presence-absence and point methods for species distribution models. Methods in Ecology and Evolution, 3(1), pp. 177-187. (doi: 10.1111/j.2041-210X.2011.00141.x)

Isojunno, S., Matthiopoulos, J. and Evans, P.G.H. (2012) Harbour porpoise habitat preferences: robust spatio-temporal inferences from opportunistic data. Marine Ecology Progress Series, 448, pp. 155-170. (doi: 10.3354/meps09415)

Murphy, S. et al. (2012) Age estimation, growth and age-related mortality of mediterranean monk seals Monachus monachus. Endangered Species Research, 16(2), pp. 149-163. (doi: 10.3354/esr00392)

New, L.F., Buckland, S.T., Redpath, S. and Matthiopoulos, J. (2011) Hen harrier management: insights from demographic models fitted to population data. Journal of Applied Ecology, 48(5), pp. 1187-1194. (doi: 10.1111/j.1365-2664.2011.02013.x)

Pirotta, E., Matthiopoulos, J. , MacKenzie, M., Scott-Hayward, L. and Rendell, L. (2011) Modelling sperm whale habitat preference: a novel approach combining transect and follow data. Marine Ecology Progress Series, 436, pp. 257-272. (doi: 10.3354/meps09236)

Matthiopoulos, J. , Hebblewhite, M., Aarts, G. and Fieberg, J. (2011) Generalized functional responses for species distributions. Ecology, 92(3), pp. 583-589. (doi: 10.1890/10-0751.1)

Wakefield, E. D. , Phillips, R. A., Trathan, P. N., Arata, J., Gales, R., Huin, N., Robertson, G., Waugh, S. M., Weimerskirch, H. and Matthiopoulos, J. (2011) Habitat preference, accessibility, and competition limit the global distribution of breeding Black-browed albatrosses. Ecological Monographs, 81(1), pp. 141-167. (doi: 10.1890/09-0763.1)

Struve, J. et al. (2010) Lost in space? Searching for directions in the spatial modelling of individuals, populations and species ranges. Biology Letters, 6(5), pp. 575-578. (doi: 10.1098/rsbl.2010.0338)

Beyer, H.L., Haydon, D.T. , Morales, J.M., Frair, J.L., Hebblewhite, M., Mitchell, M. and Matthiopoulos, J. (2010) The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2245-2254. (doi: 10.1098/rstb.2010.0083)

Fieberg, J., Matthiopoulos, J. , Hebblewhite, M., Boyce, M.S. and Frair, J.L. (2010) Correlation and studies of habitat selection: problem, red herring or opportunity? Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2233-2244. (doi: 10.1098/rstb.2010.0079)

Kie, J.G., Matthiopoulos, J. , Fieberg, J., Powell, R.A., Cagnacci, F., Mitchell, M.S., Gaillard, J.-M. and Moorcroft, P.R. (2010) The home-range concept: are traditional estimators still relevant with modern telemetry technology? Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2221-2231. (doi: 10.1098/rstb.2010.0093)

Morales, J.M., Moorcroft, P.R., Matthiopoulos, J. , Frair, J.L., Kie, J.G., Powell, R.A., Merrill, E.H. and Haydon, D.T. (2010) Building the bridge between animal movement and population dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2289-2301. (doi: 10.1098/rstb.2010.0082)

Smout, S., Asseburg, C., Matthiopoulos, J. , Fernández, C., Redpath, S., Thirgood, S. and Harwood, J. (2010) The functional response of a generalist predator. PLoS ONE, 5(5), e10761. (doi: 10.1371/journal.pone.0010761) (PMID:20523722) (PMCID:PMC2877704)

Wakefield, E. D. , Phillips, R. A., Matthiopoulos, J. , Fukuda, A., Higuchi, H., Marshall, G. J. and Trathan, P. N. (2009) Wind field and sex constrain the flight speeds of central-place foraging albatrosses. Ecological Monographs, 79(4), pp. 663-679. (doi: 10.1890/07-2111.1)

New, L.F., Matthiopoulos, J. , Redpath, S. and Buckland, S.T. (2009) Fitting models of multiple hypotheses to partial population data: investigating the causes of cycles in red grouse. American Naturalist, 174(3), pp. 399-412. (doi: 10.1086/603625)

Wakefield, E. D. , Phillips, R. A. and Matthiopoulos, J. (2009) Quantifying habitat use and preferences of pelagic seabirds using individual movement data: a review. Marine Ecology Progress Series, 391, pp. 165-182. (doi: 10.3354/meps08203)

Matthiopoulos, J. , Smout, S., Winship, A.J., Thompson, D., Boyd, I.L. and Harwood, J. (2008) Getting beneath the surface of marine mammal – fisheries competition. Mammal Review, 38(2-3), pp. 167-188. (doi: 10.1111/j.1365-2907.2008.00123.x)

Aarts, G., MacKenzie, M., McConnell, B., Fedak, M. and Matthiopoulos, J. (2008) Estimating space-use and habitat preference from wildlife telemetry data. Ecography, 31(1), pp. 140-160. (doi: 10.1111/j.2007.0906-7590.05236.x)

Hooker, S.K., Heaslip, S.G., Matthiopoulos, J. , Cox, O. and Boyd, I.L. (2008) Data sampling options for animal-borne video cameras: considerations based on deployments with antarctic fur seals. Marine Technology Society Journal, 42(2), pp. 65-75. (doi: 10.4031/002533208786829179)

Patterson, T., Thomas, L., Wilcox, C., Ovaskainen, O. and Matthiopoulos, J. (2008) State–space models of individual animal movement. Trends in Ecology and Evolution, 23(2), pp. 87-94. (doi: 10.1016/j.tree.2007.10.009)

Stephenson, C.M., Matthiopoulos, J. and Harwood, J. (2007) Influence of the physical environment and conspecific aggression on the spatial arrangement of breeding grey seals. Ecological Informatics, 2(4), pp. 308-317. (doi: 10.1016/j.ecoinf.2007.09.001)

Matthiopoulos, J. , Graham, K., Smout, S., Asseburg, C., Redpath, S., Thirgood, S., Hudson, P. and Harwood, J. (2007) Sensitivity to assumptions in models of generalist predation on a cyclic prey. Ecology, 88(10), pp. 2576-2586.

Dendrinos, P., Karamanlidis, A.A., Kotomatas, S., Legakis, A., Tounta, E. and Matthiopoulos, J. (2007) Pupping habitat use in the Mediterranean monk seal: a long-term study. Marine Mammal Science, 23(3), pp. 615-628. (doi: 10.1111/j.1748-7692.2007.00121.x)

Matthiopoulos, J. , Harwood, J. and Thomas, L. (2005) Metapopulation consequences of site fidelity for colonially breeding mammals and birds. Journal of Animal Ecology, 74(4), pp. 716-727. (doi: 10.1111/j.1365-2656.2005.00970.x)

Matthiopoulos, J. , Halley, J.M. and Moss, R. (2005) Socially induced red grouse population cycles need abrupt transitions between tolerance and aggression. Ecology, 86(7), pp. 1883-1893. (doi: 10.1890/04-0253)

Matthiopoulos, J. , McConnell, B., Duck, C. and Fedak, M. (2004) Using satellite telemetry and aerial counts to estimate space use by grey seals around the British Isles. Journal of Applied Ecology, 41(3), pp. 476-491. (doi: 10.1111/j.0021-8901.2004.00911.x)

Matthiopoulos, J. , Moss, R., Mougeot, F., Lambin, X. and Redpath, S.M. (2003) Territorial behaviour and population dynamics in red grouse Lagopus lagopus scoticus: II. Population models. Journal of Animal Ecology, 72(6), pp. 1083-1096. (doi: 10.1046/j.1365-2656.2003.00780.x)

Mougeot, F., Redpath, S.M., Moss, R., Matthiopoulos, J. and Hudson, P.J. (2003) Territorial behaviour and population dynamics in red grouse Lagopus lagopus scoticus. I. Population experiments. Journal of Animal Ecology, 72(6), pp. 1073-1082. (doi: 10.1046/j.1365-2656.2003.00781.x)

Matthiopoulos, J. (2003) Model-supervised kernel smoothing for the estimation of spatial usage. Oikos, 102(2), pp. 367-377. (doi: 10.1034/j.1600-0706.2003.12528.x)

Matthiopoulos, J. (2003) The use of space by animals as a function of accessibility and preference. Ecological Modelling, 159(2-3), pp. 239-268. (doi: 10.1016/S0304-3800(02)00293-4)

Matthiopoulos, J. , Moss, R. and Lambin, X. (2002) The kin facilitation hypothesis for red grouse population cycles: territorial dynamics of the family cluster. Ecological Modelling, 147(3), pp. 291-307. (doi: 10.1016/S0304-3800(01)00420-3)

Matthiopoulos, J. , Moss, R. and Lambin, X. (2000) The kin-facilitation hypothesis for red grouse population cycles: territory sharing between relatives. Ecological Modelling, 127(1), pp. 53-63. (doi: 10.1016/S0304-3800(99)00199-4)

Matthiopoulos, J. , Moss, R. and Lambin, X. (1998) Models of Red Grouse cycles. A family affair? Oikos, 82(3), pp. 574-590.

Smith, A., Matthiopoulos, J. and Priede, I.G. (1997) Areal coverage of the ocean floor by the deep-sea elasipodid holothurian Oneirophanta mutabilis: estimates using systematic, random and directional search strategy simulations. Deep-Sea Research Part I: Oceanographic Research Papers, 44(3), pp. 477-486. (doi: 10.1016/S0967-0637(96)00112-4)

Books

Matthiopoulos, J. (2011) How to be a Quantitative Ecologist: The ‘A to R’ of Green Mathematics and Statistics. Wiley: Chichester, UK. ISBN 9780470699782

Book Sections

Aldossari, S., Husmeier, D. and Matthiopoulos, J. (2021) Generalized functional responses in habitat selection fitted by decision trees and random forests. In: Ladde, Gangaram and Samia, Noelle (eds.) Proceedings of the 3rd International Conference on Statistics: Theory and Applications (ICSTA'21). Avestia Publishing: Ottawa, Canada, p. 125. ISBN 9781927877913 (doi: 10.11159/icsta21.125)

Aldossari, S., Matthiopoulos, J. and Husmeier, D. (2020) Statistical Modelling of Habitat Selection. In: Irigoien, Itziar, Lee, Dae-Jin, Martínez-Minaya, Joaquín and Rodríguez-Álvarez, María Xosé (eds.) Proceedings of the 35th International Workshop on Statistical Modelling. Servicio Editorial de la Universidad del País Vasco: Bilbao, Spain, pp. 275-279. ISBN 9788413192673

Borger, L., Matthiopoulos, J. , Holdo, R.M., Morales, J.M., Couzin, I. and McCauley, E. (2011) Migration quantifed: constructing models and linking them with data. In: Milner-Gulland, E.J., Fryxell, J.M. and Sinclair, A.R.E. (eds.) Animal Migration: A Synthesis. Oxford University Press: Oxford, UK, pp. 111-128. ISBN 9780199568994

Matthiopoulos, J. and Aarts, G. (2010) The spatial analysis of marine mammal abundance. In: Boyd, I.L., Bowen, W.D. and Iverson, S.J. (eds.) Marine Mammal Ecology and Conservation: A Handbook of Techniques. Oxford University Press: Oxford, UK. ISBN 9780199216567

Asseburg, C., Smout, S., Matthiopoulos, J. and Harwood, J. (2006) The functional response of generalist predators, and their implications for the monitoring of marine ecosystems. In: Boyd, I.L., Wanless, S. and Camphuysen, C.J. (eds.) Top Predators in Marine Ecosystems: Their Role in Monitoring and Management. Series: Conservation biology. Cambridge University Press: Cambridge, UK, pp. 262-274. ISBN 9780521847735

Research Reports or Papers

Hammond, P.S., MacLeod, K., Northridge, S.P., Thompson, D. and Matthiopoulos, J. (2003) Background Information to Marine Mammals. [Research Reports or Papers]

Matthiopoulos, J. and Hammond, P.S. (2003) Interactions Between Grey Seals and Fisheries: A Forecasting Model for Evaluating Management Options. [Research Reports or Papers]

Matthiopoulos, J. , Hammond, P.S. and McConnell, B. (2001) Interactions Between Grey Seals and Fisheries. [Research Reports or Papers]

Harwood, J. et al. (1999) Effects Of Large-Scale Industrial Fisheries On Non-Target Species. [Research Reports or Papers]

Conference or Workshop Item

Sanou, A., Guelbéogo, W. M., Nelli, L. , Toé, K. H., Zongo, S., Ouédraogo, P., Cissé, F., Sagnon, N., Matthiopoulos, J. and Ferguson, H.M. (2019) Biting and Resting Behaviours of Malaria Vectors in Rural Burkina Faso Following Scaling up of LLINs. 6th Pan-African Mosquito Control Association (PAMCA) Annual Conference, Yaoundé, Cameroon, 23-25 Sep 2019.

Husmeier, D. , Ferguson, E. , Matthiopoulos, J. and Insall, R. (2017) Statistical Inference of the Drivers of Collective Cell Movement. RSS 2017 Annual Conference, Glasgow, Scotland, 04-07 Sep 2017.

Conference Proceedings

Ferguson, E. A. , Matthiopoulos, J. and Husmeier, D. (2017) Constructing Wildebeest Density Distributions by Spatio-temporal Smoothing of Ordinal Categorical Data Using GAMs. In: 32nd International Workshop on Statistical Modelling, Groningen, Netherlands, 03-07 Jul 2017, pp. 70-75.

Hammond, P.S., McConnell, B.J., Stevick, P.T., Matthiopoulos, J. , Lovell, P. and Fedak, M.A. (2000) The foraging distribution and behaviour of grey seals and humpback whales: practical lessons for determining critical habitat. In: 14th Annual Conference of the European Cetacean Society, Cork, Ireland, 2 -5 Apr 2000,