2024

Algueró- Muñiz, M. et al. (2024) High resolution longitudinal eDNA metabarcoding and morphological tracking of planktonic threats to salmon aquaculture. Environmental DNA, 6(5), e70005. (doi: 10.1002/edn3.70005)

2023

Quintana, J. F. et al. (2023) γδ T cells control murine skin inflammation and subcutaneous adipose wasting during chronic Trypanosoma brucei infection. Nature Communications, 14, 5279. (doi: 10.1038/s41467-023-40962-y) (PMID:37644007) (PMCID:PMC10465518)

2022

Kazlauskaite, R. et al. (2022) Deploying an in vitro gut model to assay the impact of the mannan-oligosaccharide prebiotic bio-mos on the Atlantic Salmon (Salmo salar) gut microbiome. Microbiology Spectrum, 10(3), e0195321. (doi: 10.1128/spectrum.01953-21) (PMID:35532227) (PMCID:PMC9241627)

Hernandez-Castro, L. E. et al. (2022) Population genomics and geographic dispersal in Chagas disease vectors: landscape drivers and evidence of possible adaptation to the domestic setting. PLoS Genetics, 18(2), e1010019. (doi: 10.1371/journal.pgen.1010019) (PMID:35120121) (PMCID:PMC8849464)

Schaal, P., Cheaib, B. , Kaufmann, J., Phillips, K., Ryder, L., McGinnity, P. and Llewellyn, M. (2022) Links between host genetics, metabolism, gut microbiome and amoebic gill disease (AGD) in Atlantic Salmon. Animal Microbiome, 4, 53. (doi: 10.1186/s42523-022-00203-x) (PMID:36109797) (PMCID:PMC9479442)

2021

El Khoury, S., Gauthier, J., Bouslama, S., Cheaib, B. , Giovenazzo, P. and Derome, N. (2021) Dietary contamination with a neonicotinoid (clothianidin) gradient triggers specific dysbiosis signatures of microbiota activity along the honeybee (Apis mellifera) digestive tract. Microorganisms, 9(11), 2283. (doi: 10.3390/microorganisms9112283) (PMID:34835409) (PMCID:PMC8619528)

Cheaib, B. et al. (2021) Genome erosion and evidence for an intracellular niche – exploring the biology of mycoplasmas in Atlantic salmon. Aquaculture, 541, 736772. (doi: 10.1016/j.aquaculture.2021.736772) (PMID:34471330) (PMCID:PMC8192413)

Cheaib, B. , Seghouani, H., Llewellyn, M. , Vandal-Lenghan, K., Mercier, P.-L. and Derome, N. (2021) The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance. Animal Microbiome, 3, 3. (doi: 10.1186/s42523-020-00063-3) (PMID:33499999) (PMCID:PMC7934398)

Kazlauskaite, R. et al. (2021) SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic Salmon GI tract and associated microbial communities. Microbiome, 9, 179. (doi: 10.1186/s40168-021-01134-6) (PMID:34465363) (PMCID:PMC8408954)

2020

Heys, C. , Cheaib, B. , Busetti, A., Kazlauskaite, R., Maier, L., Sloan, W.T. , Ijaz, U.Z. , Kaufmann, J., McGinnity, P. and Llewellyn, M.S. (2020) Neutral processes dominate microbial community assembly in Atlantic salmon, Salmo salar. Applied and Environmental Microbiology, 86(8), e02283-19. (doi: 10.1128/AEM.02283-19) (PMID:32033945) (PMCID:PMC7117918)

Cheaib, B. , Seghouani, H., Ijaz, U. and Derome, N. (2020) Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations. Microbiome, 8, 14. (doi: 10.1186/s40168-020-0789-0) (PMID:32041654) (PMCID:PMC7011381)

2018

El Khoury, S., Rousseau, A., Lecoeur, A., Cheaib, B. , Bouslama, S., Mercier, P.-L., Demey, V., Vastex, M., Giovenazzo, P. and Derome, N. (2018) Deleterious interaction between honeybees (Apis mellifera) and its microsporidian intracellular parasite Nosema ceranae was mitigated by administrating either endogenous or allochthonous gut microbiota strains. Frontiers in Ecology and Evolution, 6, 58. (doi: 10.3389/fevo.2018.00058)

Cheaib, B. , Le Boulch, M., Mercier, P.-L. and Derome, N. (2018) Taxon-function decoupling as an adaptive signature of lake microbial metacommunities under a chronic polymetallic pollution gradient. Frontiers in Microbiology, 9, 869. (doi: 10.3389/fmicb.2018.00869) (PMID:29774016) (PMCID:PMC5943556)

2017

Alburaki, M., Cheaib, B. , Quesnel, L., Mercier, P.-L., Chagnon, M. and Derome, N. (2017) Performance of honeybee colonies located in neonicotinoid-treated and untreated cornfields in Quebec. Journal of Applied Entomology, 141(1-2), pp. 112-121. (doi: 10.1111/jen.12336)

2016

Sylvain, F.-É., Cheaib, B. , Llewellyn, M. , Gabriel Correia, T., Barros Fagundes, D., Luis Val, A. and Derome, N. (2016) pH drop impacts differentially skin and gut microbiota of the Amazonian fish tambaqui (Colossoma macropomum). Scientific Reports, 6, 32032. (doi: 10.1038/srep32032) (PMID:27535789) (PMCID:PMC4989189)

2015

Llewellyn, M.S. et al. (2015) Deep sequencing of the trypanosoma cruzi GP63 surface proteases reveals diversity and diversifying selection among chronic and congenital chagas disease patients. PLoS Neglected Tropical Diseases, 9(4), e0003458. (doi: 10.1371/journal.pntd.0003458) (PMID:25849488) (PMCID:PMC4388557)

2010

Halary, S., Leigh, J. W., Cheaib, B. , Lopez, P. and Bapteste, E. (2010) Network analyses structure genetic diversity in independent genetic worlds. Proceedings of the National Academy of Sciences of the United States of America, 107(1), pp. 127-132. (doi: 10.1073/pnas.0908978107) (PMID:20007769) (PMCID:PMC2806761)

Articles

Algueró- Muñiz, M. et al. (2024) High resolution longitudinal eDNA metabarcoding and morphological tracking of planktonic threats to salmon aquaculture. Environmental DNA, 6(5), e70005. (doi: 10.1002/edn3.70005)

Quintana, J. F. et al. (2023) γδ T cells control murine skin inflammation and subcutaneous adipose wasting during chronic Trypanosoma brucei infection. Nature Communications, 14, 5279. (doi: 10.1038/s41467-023-40962-y) (PMID:37644007) (PMCID:PMC10465518)

Kazlauskaite, R. et al. (2022) Deploying an in vitro gut model to assay the impact of the mannan-oligosaccharide prebiotic bio-mos on the Atlantic Salmon (Salmo salar) gut microbiome. Microbiology Spectrum, 10(3), e0195321. (doi: 10.1128/spectrum.01953-21) (PMID:35532227) (PMCID:PMC9241627)

Hernandez-Castro, L. E. et al. (2022) Population genomics and geographic dispersal in Chagas disease vectors: landscape drivers and evidence of possible adaptation to the domestic setting. PLoS Genetics, 18(2), e1010019. (doi: 10.1371/journal.pgen.1010019) (PMID:35120121) (PMCID:PMC8849464)

Schaal, P., Cheaib, B. , Kaufmann, J., Phillips, K., Ryder, L., McGinnity, P. and Llewellyn, M. (2022) Links between host genetics, metabolism, gut microbiome and amoebic gill disease (AGD) in Atlantic Salmon. Animal Microbiome, 4, 53. (doi: 10.1186/s42523-022-00203-x) (PMID:36109797) (PMCID:PMC9479442)

El Khoury, S., Gauthier, J., Bouslama, S., Cheaib, B. , Giovenazzo, P. and Derome, N. (2021) Dietary contamination with a neonicotinoid (clothianidin) gradient triggers specific dysbiosis signatures of microbiota activity along the honeybee (Apis mellifera) digestive tract. Microorganisms, 9(11), 2283. (doi: 10.3390/microorganisms9112283) (PMID:34835409) (PMCID:PMC8619528)

Cheaib, B. et al. (2021) Genome erosion and evidence for an intracellular niche – exploring the biology of mycoplasmas in Atlantic salmon. Aquaculture, 541, 736772. (doi: 10.1016/j.aquaculture.2021.736772) (PMID:34471330) (PMCID:PMC8192413)

Cheaib, B. , Seghouani, H., Llewellyn, M. , Vandal-Lenghan, K., Mercier, P.-L. and Derome, N. (2021) The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance. Animal Microbiome, 3, 3. (doi: 10.1186/s42523-020-00063-3) (PMID:33499999) (PMCID:PMC7934398)

Kazlauskaite, R. et al. (2021) SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic Salmon GI tract and associated microbial communities. Microbiome, 9, 179. (doi: 10.1186/s40168-021-01134-6) (PMID:34465363) (PMCID:PMC8408954)

Heys, C. , Cheaib, B. , Busetti, A., Kazlauskaite, R., Maier, L., Sloan, W.T. , Ijaz, U.Z. , Kaufmann, J., McGinnity, P. and Llewellyn, M.S. (2020) Neutral processes dominate microbial community assembly in Atlantic salmon, Salmo salar. Applied and Environmental Microbiology, 86(8), e02283-19. (doi: 10.1128/AEM.02283-19) (PMID:32033945) (PMCID:PMC7117918)

Cheaib, B. , Seghouani, H., Ijaz, U. and Derome, N. (2020) Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations. Microbiome, 8, 14. (doi: 10.1186/s40168-020-0789-0) (PMID:32041654) (PMCID:PMC7011381)

El Khoury, S., Rousseau, A., Lecoeur, A., Cheaib, B. , Bouslama, S., Mercier, P.-L., Demey, V., Vastex, M., Giovenazzo, P. and Derome, N. (2018) Deleterious interaction between honeybees (Apis mellifera) and its microsporidian intracellular parasite Nosema ceranae was mitigated by administrating either endogenous or allochthonous gut microbiota strains. Frontiers in Ecology and Evolution, 6, 58. (doi: 10.3389/fevo.2018.00058)

Cheaib, B. , Le Boulch, M., Mercier, P.-L. and Derome, N. (2018) Taxon-function decoupling as an adaptive signature of lake microbial metacommunities under a chronic polymetallic pollution gradient. Frontiers in Microbiology, 9, 869. (doi: 10.3389/fmicb.2018.00869) (PMID:29774016) (PMCID:PMC5943556)

Alburaki, M., Cheaib, B. , Quesnel, L., Mercier, P.-L., Chagnon, M. and Derome, N. (2017) Performance of honeybee colonies located in neonicotinoid-treated and untreated cornfields in Quebec. Journal of Applied Entomology, 141(1-2), pp. 112-121. (doi: 10.1111/jen.12336)

Sylvain, F.-É., Cheaib, B. , Llewellyn, M. , Gabriel Correia, T., Barros Fagundes, D., Luis Val, A. and Derome, N. (2016) pH drop impacts differentially skin and gut microbiota of the Amazonian fish tambaqui (Colossoma macropomum). Scientific Reports, 6, 32032. (doi: 10.1038/srep32032) (PMID:27535789) (PMCID:PMC4989189)

Llewellyn, M.S. et al. (2015) Deep sequencing of the trypanosoma cruzi GP63 surface proteases reveals diversity and diversifying selection among chronic and congenital chagas disease patients. PLoS Neglected Tropical Diseases, 9(4), e0003458. (doi: 10.1371/journal.pntd.0003458) (PMID:25849488) (PMCID:PMC4388557)

Halary, S., Leigh, J. W., Cheaib, B. , Lopez, P. and Bapteste, E. (2010) Network analyses structure genetic diversity in independent genetic worlds. Proceedings of the National Academy of Sciences of the United States of America, 107(1), pp. 127-132. (doi: 10.1073/pnas.0908978107) (PMID:20007769) (PMCID:PMC2806761)